FC921186

Overview
NameFC921186
Unique NameFC921186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921186_ssr413 microsatellite FC921186_ssr413:413..427. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.324e-47
Identity = 83/133 (62.41%), Postives = 107/133 (80.45%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTK-----LSKRVDANHHHHQNRSKV 444
            ++PCC K   +N+GAW   ED++L DYI+ +GEG WR +P+AAGL+RCGKSCRLRWMNYLRPD+KRGNF+++E++LI++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT      LS+ +D N H   N S V
Sbjct:    3 RSPCCEKAH-MNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINESVV 134          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.146e-46
Identity = 81/114 (71.05%), Postives = 98/114 (85.96%), Query Frame = 1
Query:   70 CCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDA 411
            CC+K EG+ RGAW + ED  L  Y+KA+GEGKWR +P+ AGL+RCGKSCRLRW+NYLRP+I+RGN S DEEDLI+RLH+LLGNRW+LIAGRLPGRTDN+IKNYWN+ L +R  A
Sbjct:    6 CCAK-EGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRRAGA 118          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.243e-46
Identity = 86/146 (58.90%), Postives = 106/146 (72.60%), Query Frame = 1
Query:   55 KRKTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKR-----VDANHHHHQNRSKVEKKPKTRSSSG 477
            K+ TPCC+K  G+ RG W   ED+IL  +IK  GEG+WR +PK AGL RCGKSCRLRWMNYLRP +KRG  + DEEDLI+RLH+LLGNRW+LIAGR+PGRTDN+IKNYWNT L K+     +D   H   + + +  KP+   S G
Sbjct:   12 KKTTPCCTK-MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIH-KPEEEVSGG 155          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.099e-45
Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKR-----VDANHHHHQNRSKVEKKPKTRSSSGVVP 486
            ++PCC K    N+GAW   ED+ L DYI+ +GEG WR +PK+AGL RCGKSCRLRW+NYLRPD+KRGNF+ DE+ +I++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT + ++     +D   H   N S      KT SS  VVP
Sbjct:    3 RSPCCEKAH-TNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINES------KTVSSQVVVP 142          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.177e-44
Identity = 86/130 (66.15%), Postives = 96/130 (73.85%), Query Frame = 1
Query:   52 GKRKTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDANHHHHQNRSK 441
            GKR T    + E LNRGAW   EDKIL DYI  +GEGKW  +P  AGLKRCGKSCRLRW NYLRP IKRGN S DEE+LI+RLH LLGNRW+LIAGRLPGRTDN+IKN+WN+ L KR+         R K
Sbjct:    2 GKRATTSVRREE-LNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQPKRIK 130          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.177e-44
Identity = 84/137 (61.31%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRVDA---NHHHHQNRSKVEKKPKT 462
            + PCC K  GL +G W   EDK+L  +I+ +G G WR +PK AGL RCGKSCRLRW+NYLRPDIKRGNFSK+EED I+ LH+LLGNRW+ IA RLPGRTDN+IKN W+T L KR+DA     H   +  K  KKPK+
Sbjct:    3 RAPCCEK-MGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQGGHVAASGGKKHKKPKS 138          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.177e-44
Identity = 78/115 (67.83%), Postives = 97/115 (84.35%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV 405
            ++PCC K    N+GAW   ED  LT YIKA+GEG WR +PKAAGL RCGKSCRLRW+NYLRPD+KRGNFS +E++LI++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT + +++
Sbjct:    3 RSPCCEKAH-TNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.623e-44
Identity = 80/138 (57.97%), Postives = 103/138 (74.64%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKR-----VDANHHHHQNRSKVEKKPK 459
            ++PCC K    N+GAW   ED+ L  YIKA+GEG WR +PKAAGL RCGKSCRLRW+NYLRPD+KRGNF+++E++LI++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT + ++     +D   H     S   +  K
Sbjct:    3 RSPCCEKAH-TNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQESSASQDSK 139          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.426e-44
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTKLSKRV 405
            ++PCC K    NRGAW   ED+ L  YI+A+GEG WR +PKAAGL RCGKSCRLRW+NYLRPD+KRGNF+ DE+DLIV+LH LLGN+W+LIA RLPGRTDN+IKNYWNT + +++
Sbjct:    3 RSPCCEKAH-TNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKL 116          
BLAST of FC921186 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 1
Query:   61 KTPCCSKGEGLNRGAWKAVEDKILTDYIKAYGEGKWRHIPKAAGLKRCGKSCRLRWMNYLRPDIKRGNFSKDEEDLIVRLHKLLGNRWALIAGRLPGRTDNDIKNYWNTK-----LSKRVDANHHHHQN 432
            ++PCC K    N+GAW   ED  L  YI+A+GEG WR +PKAAGL RCGKSCRLRW+NYLRPD+KRGNF+++E++LI++LH LLGN+W+LIAGRLPGRTDN+IKNYWNT      LS+ +D   H   N
Sbjct:    3 RSPCCEKAH-TNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSIN 130          
The following BLAST results are available for this feature:
BLAST of FC921186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB3_ARATH4.324e-4762.41Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYBC_MAIZE2.146e-4671.05Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB5_ARATH6.243e-4658.90Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB6_ARATH3.099e-4557.82Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
TT2_ARATH1.177e-4466.15Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB4_ORYSJ1.177e-4461.31Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB1_HORVU1.177e-4467.83Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB4_ARATH2.623e-4457.97Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB38_MAIZE3.426e-4467.83Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB08_ANTMA7.632e-4462.02Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]

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Properties
Property NameValue
Genbank descriptionC32102B08EF RVDevelopN Citrus clementina cDNA clone C32102B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921186 ID=FC921186; Name=FC921186; organism=Citrus clementina; type=EST; length=702bp
GGAAACAGAACTCTTAATCGGAGAGGAAAAGTTGTTAAGAGTCAAATGGC
GGGTAAGCGCAAGACTCCTTGCTGCTCTAAAGGGGAGGGACTCAACAGAG
GAGCTTGGAAAGCCGTTGAAGACAAAATCCTCACAGATTACATCAAGGCT
TATGGTGAAGGAAAATGGAGGCACATTCCCAAAGCTGCAGGTCTTAAGAG
ATGCGGGAAGAGTTGTAGGCTGCGGTGGATGAATTATCTAAGACCTGACA
TCAAGAGAGGCAACTTTTCTAAAGATGAAGAAGATCTCATCGTTAGACTT
CACAAGCTCTTAGGCAACAGATGGGCTCTTATAGCTGGGAGACTTCCAGG
ACGAACAGATAATGATATCAAGAATTACTGGAACACCAAGTTATCCAAGA
GAGTAGACGCAAATCATCATCATCATCAAAACCGTTCCAAAGTTGAGAAG
AAACCAAAGACCAGATCGAGCTCAGGTGTTGTGCCGCGCCCCCAATACAA
AAAAACTGAGAAACATGACGCTGCTGGCGGTGTTGCTGATGACGATGATG
ATCGGGAGGCTCCAATTTTATTTGACTATGTGCCTGTACAATCTCAGTGC
AGTTATGGGTGTAAAGAAGAAAAATCCTCCGGCTCTGATCATGAGTACAC
GGTGGATTTTGATGTTGGGGGAAAAAGCCTCTTGGATCTTCTTGATGCTA
TC
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