FC921189

Overview
NameFC921189
Unique NameFC921189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 5.763e-86
Identity = 161/193 (83.42%), Postives = 170/193 (88.08%), Query Frame = 3
Query:   90 MATAMVEDPNLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK 668
            MAT M ED N EDDQL +M+ +DI+RASRLLDNEIR++KEELQRTNLELDSF                LPYLVGNIVEILEMNPE+EAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPD LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDY+DIGGLEKQIQELVEAIVLPMTH+
Sbjct:    1 MATPMAEDSNFEDDQLHAMSTEDIIRASRLLDNEIRIIKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQ 193          
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 308.916 bits (790), Expect = 1.570e-83
Identity = 161/197 (81.73%), Postives = 168/197 (85.28%), Query Frame = 3
Query:   90 MATAMVEDPNLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKSVSE 680
            MATAM ED + E DQL+SMT DDI RASRLL NEIR+LKEE QRTNL+L+S                 LPYLVGNIVEILEM+PED+AEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPD LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK   E
Sbjct:    1 MATAMAEDTSFEGDQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFE 197          
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.050e-83
Identity = 159/194 (81.96%), Postives = 169/194 (87.11%), Query Frame = 3
Query:   90 MATAMVEDPN-LEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK 668
            MAT MVED +  E+DQL+SM+ +DI RA+RLLDNEIR+LKE+ QRTNLE DS+                LPYLVGNIVEILEMNPED+AEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPD LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK
Sbjct:    1 MATPMVEDTSSFEEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK 194          
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.050e-83
Identity = 159/194 (81.96%), Postives = 170/194 (87.63%), Query Frame = 3
Query:   90 MATAMVEDPN-LEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK 668
            MAT MVED +  E+DQL+SM+ +DIVRA+RLL+NEIR+LKE+ QRTNLE DS+                LPYLVGNIVEILEMNPED+AEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPD LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK
Sbjct:    1 MATPMVEDTSSFEEDQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK 194          
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 305.064 bits (780), Expect = 2.266e-82
Identity = 157/192 (81.77%), Postives = 169/192 (88.02%), Query Frame = 3
Query:   93 ATAMVEDPNLEDDQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK 668
            A AM  D + +DDQL+SM+ +DIVRA+RLLDNE RVLK+ELQRTNLE++S+                LPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPV+GLVDP+KLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK
Sbjct:    9 AAAMAVD-DADDDQLASMSTEDIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHK 199          
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.580e-62
Identity = 117/184 (63.59%), Postives = 146/184 (79.35%), Query Frame = 3
Query:  129 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKSVSE 680
            +++  M+ ++IV+ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP+EYDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HK   E
Sbjct:   31 EEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFE 213          
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 9.899e-62
Identity = 116/184 (63.04%), Postives = 146/184 (79.35%), Query Frame = 3
Query:  129 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKSVSE 680
            +++  M+ ++I++ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP+EYDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HK   E
Sbjct:   31 EEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFE 213          
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 9.899e-62
Identity = 116/184 (63.04%), Postives = 146/184 (79.35%), Query Frame = 3
Query:  129 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKSVSE 680
            +++  M+ ++I++ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP+EYDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HK   E
Sbjct:   15 EEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFE 197          
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.689e-61
Identity = 116/184 (63.04%), Postives = 146/184 (79.35%), Query Frame = 3
Query:  129 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKSVSE 680
            +++  M+ ++IV+ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP++YDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HK   E
Sbjct:   34 EEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFE 216          
BLAST of FC921189 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.205e-61
Identity = 116/179 (64.80%), Postives = 143/179 (79.89%), Query Frame = 3
Query:  144 MTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKSVSE 680
            M+ ++I++ +RLLD+EI+++K E+ R   EL +                 LPYLV N++E+L+++P D+ EEDGANIDLDSQRKGKC V+KTSTRQT FLPV+GLVD +KLKPGDLVGVNKDSYLIL+TLP+EYDSRVKAMEVDE+PTE Y+DIGGL+KQIQELVEAIVLPM HK   E
Sbjct:    1 MSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQ-EEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFE 178          
The following BLAST results are available for this feature:
BLAST of FC921189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
PRS6A_SOLLC5.763e-8683.4226S protease regulatory subunit 6A homolog OS=Sola... [more]
PS6AB_ARATH1.570e-8381.7326S protease regulatory subunit 6A homolog B OS=Ar... [more]
PS6AA_ARATH2.050e-8381.9626S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM2.050e-8381.9626S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS6A_ORYSJ2.266e-8281.7726S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_RAT7.580e-6263.5926S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN9.899e-6263.0426S protease regulatory subunit 6A OS=Homo sapiens... [more]
PR6AA_XENLA9.899e-6263.0426S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS6A_MOUSE1.689e-6163.0426S protease regulatory subunit 6A OS=Mus musculus... [more]
PR6AB_XENLA2.205e-6164.8026S protease regulatory subunit 6A-B OS=Xenopus la... [more]

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Properties
Property NameValue
Genbank descriptionC32102B12EF RVDevelopN Citrus clementina cDNA clone C32102B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921189 ID=FC921189; Name=FC921189; organism=Citrus clementina; type=EST; length=682bp
GGGTACAAGTTGGAGTTTTTAACTTTTGAGCCACACTCTTGTCTCTCTTT
TATTTTCTCGGTGCAAATTTTGTGGGGAAATATAATCATATGGCGACGGC
AATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGTCTTCCATGACGG
CCGATGATATTGTTCGGGCGTCGCGGCTACTCGACAACGAGATTCGTGTC
CTAAAGGAAGAATTACAAAGAACGAATCTTGAGTTAGATTCGTTCAAGGA
GAAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATAAGCAGCTTCCTT
ACTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAACCCGGAGGATGAG
GCTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCAAAGGAAGGGTAA
ATGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCTTTCTTCCGGTAG
TCGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGATCTGGTTGGAGTT
AATAAGGATAGTTACTTGATCCTGGACACACTGCCTTCTGAGTATGATTC
TCGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTGAAGATTATAATG
ACATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTTGAGGCTATTGTG
CTGCCAATGACACACAAGAGCGTTTCAGAAGT
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