FC921192

Overview
NameFC921192
Unique NameFC921192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15202 contig Ccv1_Contig15202:65..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921192 vs. ExPASy Swiss-Prot
Match: U183_ARATH (UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2)

HSP 1 Score: 394.045 bits (1011), Expect = 3.808e-109
Identity = 184/220 (83.64%), Postives = 197/220 (89.55%), Query Frame = 3
Query:   30 LQSQKPRRRCEGTAMGAIILDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYMEEVHAK 689
            L  Q+PRRR EGTAMGA + DLRPGVGIGPFS+GMPICEAFA IEQQPNIYDVVHVKY+DE+PLKLD+VISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAVYALFGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTCRVSIYD S+DKKVGVG L D+A  P LP GSLYMEEVH K
Sbjct:   11 LVMQRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYDEDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAVYALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTCRVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVK 230          
BLAST of FC921192 vs. ExPASy Swiss-Prot
Match: U183_DROME (UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.586e-22
Identity = 64/177 (36.16%), Postives = 94/177 (53.11%), Query Frame = 3
Query:   87 LDLRPGVGIG----PFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQ----YADCCQDREAELPLEFPDGTTPVTCRVSIYDGS 593
            L++ P + +G     F LGM   +A A I+ Q  I   V V Y D  PL +DI+I+ P  G  L FDP SQRL+ IE+F++K +++RY          L +   +   FG T PGVYD  + ++ L + GLSF FP+ ++    YA           L F +G +PV  ++S+Y GS
Sbjct:    4 LEIVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTTPLGVDIIINLPQDGVRLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPEVLPSIEQIEHSFGATHPGVYDAAKQLFALHFRGLSFYFPVDSKLHSGYAHGLSS------LVFLNGASPVVSKMSLYAGS 174          
BLAST of FC921192 vs. ExPASy Swiss-Prot
Match: U183_CAEEL (UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.280e-18
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  120 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFP 482
            F LGMPI +  A I+Q P +   V +KY  ++P   DI+I     G  L FD  SQ ++LIE+ ++  + + Y  ++    + +AT   V   FG T PG YD + ++Y+  +PGLSF FP
Sbjct:   37 FVLGMPINQCIAMIQQHPRMLTKVELKYSKKDPFYQDIIIYIGSTGIRLYFDGLSQLIKLIEVDNLSMITLTYNDTIFSDPNNMATLDRVNEFFGSTHPGSYDDKHNIYVQSWPGLSFCFP 157          
BLAST of FC921192 vs. ExPASy Swiss-Prot
Match: CP070_RAT (UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 59/194 (30.41%), Postives = 100/194 (51.55%), Query Frame = 3
Query:  120 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----VGSLYMEEV 680
            F+LGMP+ +A A +++   I   V V Y ++ PL  D++++    G  L FD ++QRL++IE++D+ +++++Y        +   T   +   FG T PGVY+    ++ L + GLSF+F + +   A   +   A     L+ P G T    R+ IY G+        SL D   AP +P    +G++Y E V
Sbjct:   19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKVIEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESV 201          
BLAST of FC921192 vs. ExPASy Swiss-Prot
Match: CP070_HUMAN (UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 59/194 (30.41%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  120 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----VGSLYMEEV 680
            F+LGMP+ +A A +++   I   V V Y ++ PL  D++++    G  L FD ++QRL++IE+ D+ +++++Y        +   T   +   FG T PGVY+    ++ L + GLSF+F + +   A   +   A     L+ P G T    R+ IY G+        SL D   AP +P    +G++Y E V
Sbjct:   19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SLQDTK-APMMPLSCFLGNVYAESV 201          
BLAST of FC921192 vs. ExPASy Swiss-Prot
Match: CP070_MOUSE (UPF0183 protein C16orf70 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 57/192 (29.69%), Postives = 98/192 (51.04%), Query Frame = 3
Query:  120 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPA-QYADCCQDREAE--LPLEFPDGTTPVTCRVSIYDGSA--DKKVGVGSLFDKAIAPSLPVGSLYMEEV 680
            F+LGMP+ +A A +++   I   V V Y ++ PL  D++++    G  L FD ++QRL++IE+ ++ +++++Y        +   T   +   FG T PGVY+    ++ L + GLSF+F + +   A   +   A     L+ P G T    R+ IY G++  D K  V  L       S  +G++Y E V
Sbjct:   19 FTLGMPLAQAVAILQKHCRIIRNVQVLYSEQSPLSHDLILNLTQDGITLLFDAFNQRLKVIEVCELTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSTEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGNSLQDTKAPVMPL-------SCFLGNVYAESV 201          
The following BLAST results are available for this feature:
BLAST of FC921192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U183_ARATH3.808e-10983.64UPF0183 protein At3g51130 OS=Arabidopsis thaliana ... [more]
U183_DROME1.586e-2236.16UPF0183 protein CG7083 OS=Drosophila melanogaster ... [more]
U183_CAEEL5.280e-1837.19UPF0183 protein T01G9.2 OS=Caenorhabditis elegans ... [more]
CP070_RAT9.958e-1730.41UPF0183 protein C16orf70 homolog OS=Rattus norvegi... [more]
CP070_HUMAN2.897e-1630.41UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf... [more]
CP070_MOUSE2.453e-1529.69UPF0183 protein C16orf70 homolog OS=Mus musculus P... [more]
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Properties
Property NameValue
Genbank descriptionC32102C04EF RVDevelopN Citrus clementina cDNA clone C32102C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921192 ID=FC921192; Name=FC921192; organism=Citrus clementina; type=EST; length=691bp
GAACAAAATCCAGAATCCAAATCCAAATGTTACAGAGCCAGAAACCCCGT
CGACGTTGCGAGGGCACGGCCATGGGCGCCATCATTCTCGATCTTCGACC
TGGCGTCGGCATCGGTCCCTTTTCTCTCGGGATGCCGATTTGCGAAGCAT
TTGCTTCAATAGAACAACAGCCTAATATCTATGATGTTGTCCATGTGAAG
TACTTTGATGAGGAACCACTGAAGCTTGATATCGTTATTAGCTTTCCAGA
TCATGGATTTCATCTTCGTTTTGATCCATGGTCTCAGAGATTACGCCTTA
TTGAAATATTTGATATCAAACGGCTTCAAATGCGTTATGCCACTTCGTTG
ATTGGGGGATCATCAACTCTAGCTACTTTTGTGGCGGTATATGCACTATT
TGGGCCAACCTTTCCTGGAGTTTACGACAAAGAAAGAAGTGTTTATATGC
TATTCTACCCAGGGCTGTCTTTTGCTTTTCCAATTCCAGCTCAGTATGCA
GATTGCTGCCAGGATAGAGAAGCGGAACTGCCCTTAGAGTTTCCTGATGG
CACTACGCCTGTTACATGCCGTGTCTCTATATATGATGGTTCTGCAGATA
AAAAAGTTGGTGTTGGATCGTTATTTGACAAGGCTATTGCTCCTTCGTTA
CCTGTTGGAAGCTTGTACATGGAAGAAGTGCATGCTAAGCT
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