FC921196

Overview
NameFC921196
Unique NameFC921196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921196 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 49/86 (56.98%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:  388 QALKQLPREKMQVATKFXXXXXXXXXXXXXXX----PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 633
            +ALK   RE++ +ATKF                   P YVR+ CEASLKRLD+D IDLYYQHRVDT VPIE T+GE+KKLVEEGK+
Sbjct:   75 KALKGGTRERVVLATKFGIVLGDEKKAEGKRAVHGDPAYVRAACEASLKRLDIDCIDLYYQHRVDTRVPIEITVGELKKLVEEGKL 160
[Close]
BLAST of FC921196 vs. ExPASy Swiss-Prot
Match: IN22_MAIZE (IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 47/82 (57.32%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:  388 QALKQLPREKMQVATKFXXXXXXXXXXXXXXXPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 633
            +AL+   REK+++ATKF               P YVR+ CE S KRL VD IDLYYQHR+D  VPIE TIGE+KKLVEEGKI
Sbjct:   75 KALQGGVREKVELATKFGVSFADGKREIHGD-PAYVRTACEGSFKRLGVDCIDLYYQHRIDKRVPIEVTIGELKKLVEEGKI 155
The following BLAST results are available for this feature:
BLAST of FC921196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
A115_TOBAC9.084e-1856.98Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
IN22_MAIZE1.713e-1657.32IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC32102C09EF RVDevelopN Citrus clementina cDNA clone C32102C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921196 ID=FC921196; Name=FC921196; organism=Citrus clementina; type=EST; length=692bp
AGTAAAGGAATCACTTTCTTTGATACTGCTGATGTGTACGGACAAAATGC
TAATGAAGTTCTTCTTGGAAAGGTTATGGTTTTCTGTTGCAATTTTCTTA
ACAACGTTTCTGTATGATAAATTTAATTATATACAATTCACACATAGATC
AAGTGGTAACTTAAGGAGTATGATGGTTACTAAGATTCGAGAAATTTTTC
TTATAACTCGTTGACAATACAAGGATCACAATACTAATAATGAAATATTT
TATGCTAATAATGAAATATTTTTGTTAAGGGAATTGGTAAATAGCTACTT
TTGGGTACTATTGTGGATATCATAGGATGGAAATCATTATCAGAATATTG
TGAATTTATTGGAAAAATAATTCACTCCTTTTCATTTCAGGCCTTGAAGC
AGTTGCCTAGAGAAAAGATGCAAGTAGCAACAAAGTTTGGGATTGCAGGA
ATAGGAGTTGCTGGTGTGATCGTGAAGGGTGCCCCTGATTATGTGCGCTC
GTGTTGTGAAGCTAGCTTGAAGCGCCTTGATGTGGATTACATTGATCTAT
ATTATCAACATAGAGTGGACACATCAGTCCCCATAGAGGAAACCATTGGC
GAAATGAAGAAGCTGGTGGAAGAAGGTAAAATCAGTACATTGGATTATCT
GAGGCAGCCCAGGCACATTAGGAAGCACATGCTGTCATCCAT
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