FC921202

Overview
NameFC921202
Unique NameFC921202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9400 contig Ccv1_Contig9400:2..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921202 vs. ExPASy Swiss-Prot
Match: TOC34_ARATH (Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.832e-67
Identity = 125/177 (70.62%), Postives = 148/177 (83.62%), Query Frame = 3
Query:  153 ASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDGLDYEVFCSK 683
            A Q +REW+GIQQFPPATQ+          +E+V++LT+LVMGKGGVGKSSTVNS+IGEKA  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN  AI +IKRFLLN TIDVLLYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHAQ S PDGL+Y  F SK
Sbjct:    3 ALQTLREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHAQFSPPDGLNYNHFVSK 179          
BLAST of FC921202 vs. ExPASy Swiss-Prot
Match: TOC34_PEA (Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.831e-67
Identity = 125/180 (69.44%), Postives = 145/180 (80.56%), Query Frame = 3
Query:  144 MSMASQVIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDGLDYEVFCSK 683
            M+   Q +REW GI  F PATQT          QE+VN+LTILVMGKGGVGKSSTVNSIIGE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N  A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ S PDGL Y+ F SK
Sbjct:    1 MASQQQTVREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180          
BLAST of FC921202 vs. ExPASy Swiss-Prot
Match: TOC33_ARATH (Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.757e-61
Identity = 112/174 (64.37%), Postives = 139/174 (79.89%), Query Frame = 3
Query:  162 VIREWMGIQQFPPATQTXXXXXXXXXXQENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDGLDYEVFCSK 683
            ++REW+G QQFP ATQ           Q+++N++T+LV+GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN+ A++LIK FL+N+TIDVLLYVDRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHAQ S PD L YE F SK
Sbjct:    4 LVREWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177          
BLAST of FC921202 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  243 QENVNTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDG-----LDYEVFCSK 683
            +E + +L ILV+GK GVGKS+T+NSI+G +  ++  F         +S +  G  +  +DTPGL         N   +  +K+ +     D++LYVDRLD    D  +  + R IT + G  IWK A++ LTHA  + PDG     L Y+VF ++
Sbjct:  850 EELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTPLSYDVFVAQ 1004          
BLAST of FC921202 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 50/134 (37.31%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  264 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG---YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDG 656
            TI+V+GK GVGKS+T+NSI  E  ++   FQ    +   +     G  + ++DTPGL+      + N   ++ ++ F+     D++LY+DRLD+   D+ D  + R ITD FG  IW  A++ LTHA  + PDG
Sbjct:  458 TIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGLTHAASAPPDG 591          
BLAST of FC921202 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  264 TILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDG 656
            TI+V+GK GVGKS+T+NSI  E       FQ    R   V     G  + ++DTPGL+        N   +  +K F+     D++LY+DRLD+   D+ D  + R I+D FG  IW  A++ LTHA    PDG
Sbjct:  576 TIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGLTHAASVPPDG 709          
BLAST of FC921202 vs. ExPASy Swiss-Prot
Match: GTPA_DICDI (GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 50/135 (37.04%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  255 NTLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE--GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD 653
            N   +L++G+ GVGKSST+N++ G   + V + +S    P   SR   GF LNI+DTPG ++  G  V+ + +  I+R+L  KTI  +L+V++    R D   + +    T+  G Q+W+ A +VLT+A   LPD
Sbjct:  150 NECNVLLLGRTGVGKSSTLNTVFGID-IPVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLTYANSVLPD 283          
BLAST of FC921202 vs. ExPASy Swiss-Prot
Match: TOC90_ARATH (Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  258 TLTILVMGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL----IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP----DGLDYEVFCSKGQRL 695
            +L ILV+GK GVGKS+T+NSI G+       F+    R   V  + +G  +  +DTPG           N   +  IKR++  +  DV+LY+DRLD+  +   D  + + IT+ FG  IW   ++V+TH+  +        ++YE +   GQR+
Sbjct:  166 SLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILVMTHSAATTEGRNGQSVNYESYV--GQRM 317          
The following BLAST results are available for this feature:
BLAST of FC921202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TOC34_ARATH2.832e-6770.62Translocase of chloroplast 34, chloroplastic OS=Ar... [more]
TOC34_PEA4.831e-6769.44Translocase of chloroplast 34 OS=Pisum sativum GN=... [more]
TOC33_ARATH6.757e-6164.37Translocase of chloroplast 33, chloroplastic OS=Ar... [more]
TC159_ARATH1.289e-1935.48Translocase of chloroplast 159, chloroplastic OS=A... [more]
TC120_ARATH2.199e-1937.31Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC132_ARATH3.176e-1838.81Translocase of chloroplast 132, chloroplastic OS=A... [more]
GTPA_DICDI1.207e-1737.04GTP-binding protein A OS=Dictyostelium discoideum ... [more]
TOC90_ARATH9.561e-1533.12Translocase of chloroplast 90, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC32102D04EF RVDevelopN Citrus clementina cDNA clone C32102D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921202 ID=FC921202; Name=FC921202; organism=Citrus clementina; type=EST; length=700bp
GCTCTGGTTTTGGGTTTAAGGACTCAGCAGTAGCAGACGAGGTGCAAACA
AATTCCCCAAAAACCCAAATTCACACTCTCCGCATTAAATTTCTCTTCTA
TGTGAACTCTACGGTCACATTTTTCAATTTGTAGGACAGACATATGTCTA
TGGCGTCTCAAGTAATACGTGAATGGATGGGAATTCAGCAGTTCCCACCT
GCCACTCAAACAAAATTGCTTGAATTGTTGGGAAAACTTAAACAAGAGAA
TGTGAACACATTGACCATACTTGTGATGGGGAAGGGTGGCGTTGGGAAAT
CATCAACTGTAAACTCTATCATAGGAGAGAAAGCGGTTACTGTTAGTACG
TTTCAGTCGGAAGGACCAAGACCTGTGATGGTTTCCCGCTCCAGGGCTGG
ATTTACATTGAACATTGTTGACACTCCTGGGCTCATAGAAGGTGGATATG
TCAATTATCATGCTATTCAGCTAATCAAACGTTTCCTTCTGAACAAAACT
ATCGATGTTCTACTGTATGTCGACCGTCTGGATGTTTATAGGGTAGATAA
TTTGGATAAGCAGATTACTAGAGCCATAACGGATAATTTTGGTGAACAAA
TATGGAAGAGGGCTTTGATTGTTCTCACACATGCTCAACTCTCATTGCCA
GACGGATTAGATTATGAAGTTTTTTGCTCCAAAGGTCAGAGGCTCTTCTA
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