FC921208

Overview
NameFC921208
Unique NameFC921208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921208_ssr48 microsatellite FC921208_ssr48:48..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8917 contig Ccv1_Contig8917:179..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921208 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.310e-77
Identity = 142/215 (66.05%), Postives = 166/215 (77.21%), Query Frame = 1
Query:   85 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNVAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSILATH-HKITRYEK 726
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFN AG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+       KI+RY K
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNK 559          
BLAST of FC921208 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.284e-75
Identity = 133/185 (71.89%), Postives = 153/185 (82.70%), Query Frame = 1
Query:  175 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNVAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSILATH-HKITRYEK 726
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFN AG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+       KI+RY K
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNK 556          
BLAST of FC921208 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.284e-75
Identity = 141/197 (71.57%), Postives = 158/197 (80.20%), Query Frame = 1
Query:  142 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNVAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSILATH-HKITRYEK 726
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+       KI+RY K
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNK 561          
BLAST of FC921208 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 61/182 (33.52%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  199 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNVAGVT---GRPNVDWCE--SHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSILATHHKITRYEK 726
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T   G   +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+RMPI+ + +  +   KI  Y +
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIEQNPRSFITKILSYSR 181          
The following BLAST results are available for this feature:
BLAST of FC921208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM2_ARATH3.310e-7766.05Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM3_ARATH5.284e-7571.89Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH5.284e-7571.57Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
YL780_MIMIV1.510e-2133.52Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionC32102D10EF RVDevelopN Citrus clementina cDNA clone C32102D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921208 ID=FC921208; Name=FC921208; organism=Citrus clementina; type=EST; length=737bp
GAAACACTTTCAGCTTCTTACATGAATTGAAAGCTGAAAGCCACCCAACA
CACACACATAGATTCCAATCAATAGTACGAAATTCTAACAGATCCAAATT
CAAATCGAAATCCGATCCAGTCTCATCTCTCCTTTGCATTCACTCACCAT
TACCCAATGGGTTTCCCAGCCAACGGCTCCGACGCCGGCTCCAAGCCGCT
CAAGTTTCTCATCTACGGCCGCACTGGCTGGATCGGGGGCTTGCTCGGCA
AGCTCTGCCAAGCTCAGTCCATTGACTTCACCTACGGCTCCGGCCGCCTC
GAGAACCGCGCCTCCCTCGAAGCCGACATCGCCGCCGTCAAGCCCACCCA
CGTCTTCAACGTGGCCGGGGTGACCGGTAGGCCCAACGTCGACTGGTGCG
AATCGCATAAGGTCGAGACCATACGGACTAATGTCGTCGGCACCCTTACG
CTTGCTGACGTCTGCAGAGACAAAGGTTTGATTCTCATTAATTACGCCAC
CGGCTGCATCTTCGAGTACGATTCCGGTCACCCCCTCGGATCCGGCATCG
GCTTCAAGGAGGAGGATACTCCGAATTTTGTCGGATCTTTCTACTCCAAG
ACTAAGGCCATGGTGGAAGAGTTGCTCAAGAATTTTGAGAATGTCTGTAC
TTTGCGTGTCAGGATGCCGATCTCATCAGATTTATCCATCCTCGCAACTC
ATCACAAGATCACTCGATATGAAAAGTAGTCACATTC
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