FC921218

Overview
NameFC921218
Unique NameFC921218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14269 contig Ccv1_Contig14269:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.829e-66
Identity = 123/210 (58.57%), Postives = 141/210 (67.14%), Query Frame = 2
Query:   47 SPEEEHPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            +PE  HP KAFGWAARD+SG LSP  FSRR TG++DV  KVLYCGICH+DLH IKNEWG +++P +PGHEI G VTE                     +C SCESC N LENYCPK+I TY S   DGT+TYGGYSD MV  E + VR PD+M LDA APLLCAG+TVYSPLK+FEL +                AVKF KAFGA+VTVI
Sbjct:    5 APENVHPQKAFGWAARDTSGTLSPLKFSRRATGEQDVTFKVLYCGICHSDLHYIKNEWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVI 214          
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.303e-66
Identity = 118/213 (55.40%), Postives = 148/213 (69.48%), Query Frame = 2
Query:   38 MAKSPEEEHPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            MAKSPE E P+KAFGWAARD+SG LSPF+FSRRE GD+DV +K+LYCG+CH+DLH +KN+WGF+ +P+VPGHEI G VT+                     +C +CE+C  DLE YCPK + TY S    GT TYGGYSD +V ++RY+V+FPD++PLDA APLLCAGITVYSP+KY+ + E                A+KF KAFG +VTVI
Sbjct:    1 MAKSPETELPLKAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNS-PYKGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVI 212          
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 8.232e-66
Identity = 123/208 (59.13%), Postives = 142/208 (68.27%), Query Frame = 2
Query:   53 EEEHPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            E+EH  KA GWAARDSSG LSPFNF RRETG++DV  KVLYCGICH+DLH +KNEWGFS +P+VPGHEI GEVTE                     +C SCE+C + LENYCPK I TY +   DG+ TYGGYSD MVA+E +IVR PD++PLD AAPLLCAGIT YSPL+YF L +                AVKFAKA G +VTVI
Sbjct:    4 EQEHRKKASGWAARDSSGVLSPFNFYRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVI 211          
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.834e-65
Identity = 121/213 (56.81%), Postives = 143/213 (67.14%), Query Frame = 2
Query:   38 MAKSPEEEHPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            MAKSPE EHPVKA GWAA D+SG  SPFNFSRR TG+ DV+ +VLYCG+CH+DLH +KNEWG + +P+VPGHEI G VTE                     +C  C+ C+NDLENYC K I TY +   DGTI  GGYSD MVA+E +I+R+P++ PLDA APLLCAGIT YSPLKYF L +                AVKFAKAFG +VTVI
Sbjct:    1 MAKSPETEHPVKALGWAATDNSGTFSPFNFSRRATGERDVQFRVLYCGVCHSDLHMVKNEWGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVI 213          
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.189e-64
Identity = 112/213 (52.58%), Postives = 144/213 (67.61%), Query Frame = 2
Query:   38 MAKSPEEEHPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            MAKSPE EHP K FGW ARD SG LSPF+FSRR+ G+ DV +K+L+CG+CHTDLH IKN+WG+S +P+VPGHEI G  T+                     +C SCESC  DLENYCP++  TY +I +DGT  YGGYS+ +V ++R+++RFP+++P D+ APLLCAGITVYSP+KY+ + E                AVK  KAFG +VTVI
Sbjct:    1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVI 213          
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.552e-64
Identity = 120/213 (56.34%), Postives = 146/213 (68.54%), Query Frame = 2
Query:   38 MAKSPEEEHPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            MAKS E EHPVKAFGWAARD++G LSPF FSRR TG++DVRLKVL+CG+CH+D H I N WGF+ +P+VPGHEI G VTE                     +C SCESC ++ E++C   I TY SI  DGT+T+GGYSD MVA+E +I+R+P ++PLD+ APLLCAGIT YSPLKY+ L +                AVK AKAFGAQVTVI
Sbjct:    1 MAKSSEIEHPVKAFGWAARDTTGLLSPFKFSRRATGEKDVRLKVLFCGVCHSDHHMIHNNWGFTTYPIVPGHEIVGVVTEVGSKVEKVKVGDNVGIGCLVGSCRSCESCCDNRESHCENTIDTYGSIYFDGTMTHGGYSDTMVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGGLGHVAVKMAKAFGAQVTVI 213          
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.716e-63
Identity = 115/210 (54.76%), Postives = 143/210 (68.10%), Query Frame = 2
Query:   47 SPEEEHPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            S E+E  V+AFGWAARDSSGHLSPF FSRR+TG+E+VR+KVLYCGICH+DLH +KNEW  S++P+VPGHEI GEV+E                     +C +CESC  D ENYC K I TY  ++ DGTI YGGYSD +V +ERY V+ P ++PL +AAPLLCAGI++YSP+KYF L                   V+FAKAFG +VTV+
Sbjct:    5 SGEKEQSVEAFGWAARDSSGHLSPFVFSRRKTGEEEVRVKVLYCGICHSDLHCLKNEWHSSIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVRFAKAFGTKVTVV 214          
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 3.579e-61
Identity = 114/204 (55.88%), Postives = 136/204 (66.67%), Query Frame = 2
Query:   65 PVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            P  A G AARD+SGHLSP   SRR TGD+DV +K+LYCGICH+DLH+IKNEW  + +P+VPGHEIAG VTE                     +CHSC+SC   LEN+CP VI TY S++ DGT+TYGGYS  +V +ER++VRFP++MPLD  APLLCAGITVYSP+KY  L                  AVKFAKAFG  VTVI
Sbjct:    3 PTAAAGLAARDASGHLSPLTISRRSTGDDDVVIKILYCGICHSDLHSIKNEWKNATYPLVPGHEIAGVVTEAGKNVTKFKGGDKVGVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTVI 206          
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.750e-60
Identity = 110/202 (54.46%), Postives = 136/202 (67.33%), Query Frame = 2
Query:   71 KAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            +A G AARDSSGHLSPF  SRR TGD+DV +K+L+CGICH+DLH IKNEW  S++P+VPGHEIAG VTE                     +C SCESC N  EN+CP+ + TY S++ DGT+TYGGYS  +V +ER++V FP++MPLD  APLLCAGITVY+P+KY  L                  AVKFA+AFG +VTVI
Sbjct:   15 QAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVI 216          
BLAST of FC921218 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.964e-59
Identity = 111/202 (54.95%), Postives = 134/202 (66.34%), Query Frame = 2
Query:   71 KAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLHNIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKVIPTYTSINTDGTITYGGYSDQMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFELAEXXXXXXXXXXXXXXXXAVKFAKAFGAQVTVI 676
            +AFG AA+D+SG LSPF+F+RRETG++DVR KVL+CGICH+DLH +KNEWG S +P+VPGHEI G VTE                     +C SC+SC   +ENYCPK I TY     D TITYGGYSD MV  E +++R PD++PLDAAAPLLCAGITVYSP+KY  L +                 VKFAKA G +VTVI
Sbjct:    8 EAFGLAAKDNSGVLSPFSFTRRETGEKDVRFKVLFCGICHSDLHMVKNEWGMSTYPLVPGHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVI 209          
The following BLAST results are available for this feature:
BLAST of FC921218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MTDH_MESCR2.829e-6658.57Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH_MEDSA6.303e-6655.40Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH_FRAAN8.232e-6659.13Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
GEDH1_OCIBA1.834e-6556.81Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH9_ARATH1.189e-6452.58Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
MTDH_APIGR1.552e-6456.34Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH6_ARATH1.716e-6354.76Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH5_ORYSJ3.579e-6155.88Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH3_ORYSJ6.750e-6054.46Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH8_ARATH1.964e-5954.95Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC32102E08EF RVDevelopN Citrus clementina cDNA clone C32102E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921218 ID=FC921218; Name=FC921218; organism=Citrus clementina; type=EST; length=766bp
GAATCAATAATGATAACATTGCCGTTCTCTCATCAAAATGGCAAAATCAC
CAGAAGAAGAACATCCAGTAAAGGCCTTTGGGTGGGCAGCCCGAGACAGC
TCCGGCCATCTCTCCCCATTCAACTTCTCCAGAAGGGAAACGGGTGATGA
GGATGTGAGGCTGAAGGTATTGTATTGTGGGATCTGCCATACTGATCTCC
ACAACATCAAGAATGAATGGGGCTTCTCTCTCTTCCCTATGGTTCCTGGG
CATGAAATTGCAGGGGAAGTAACAGAAGTTGGCAGCAAAGTAAGAAAGGT
TAAAGTGGGAGATAAAGTTGGAGTTGGATGCATGGTTGGTGCATGCCACA
GCTGCGAGAGCTGTGCCAATGACCTTGAAAATTACTGTCCGAAAGTGATA
CCCACCTACACTTCCATTAACACTGACGGAACAATCACATACGGAGGCTA
CTCTGATCAAATGGTTGCCAATGAGCGCTACATTGTTCGATTCCCTGATA
GCATGCCCCTTGATGCTGCTGCTCCCCTGCTTTGCGCCGGGATTACCGTG
TACAGTCCATTGAAATACTTTGAACTAGCAGAACATGGAAAGCATGTAGG
CATCGTTGGCCTTGGTGGGCTTGGTCATGTCGCTGTCAAATTTGCCAAGG
CTTTTGGGGCCCAAGTGACAGTAATTAGCACCTCTCCAAGCAGAGACTGA
AGCTCTTGACATCTGGCGCTGATCATTTTTGATAGCGTGACCCTGACATG
CAGGTGCATGGCACAT
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