FC921234

Overview
NameFC921234
Unique NameFC921234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921234 vs. ExPASy Swiss-Prot
Match: TOC90_ARATH (Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.548e-71
Identity = 131/223 (58.74%), Postives = 169/223 (75.78%), Query Frame = 1
Query:    1 FDGINLETAVEIKSNVFASIAGQITKDKHDFNIHSESAAAYV-DPEGPTYCIGLDVQSSGKDMIYTVHGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGKRLKLAMNAGRMGGSGQVAYGGSFEAILRGADYPVRNDNISLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRKMGQVCIKLNSSAHMEIALLAVFSIFRGLLRRKAAE 666
            FDGIN+ETA +I  N+FAS  GQ+++DK  F I SE+ AAY  +    T+ + +D+QSSG+D++Y+  G TKL+ FKHN TD GV LTSFG K YVG KLED+LLVGKR+KL  NAG+M GSGQ A GGSFEA +RG DYPVRN+ I LTMTALSF +E+VL  G Q++FRP RG N+ VN N+N+RKMG++ +KLNSS H EIAL++  ++F+ L+RR   E
Sbjct:  555 FDGINIETAAKINRNLFASATGQVSRDKQRFTIQSETNAAYTRNFREQTFSVAVDLQSSGEDLVYSFQGGTKLQTFKHNTTDVGVGLTSFGGKYYVGGKLEDTLLVGKRVKLTANAGQMRGSGQTANGGSFEACIRGRDYPVRNEQIGLTMTALSFKRELVLNYGLQTQFRPARGTNIDVNINMNNRKMGKINVKLNSSEHWEIALISALTMFKALVRRSKTE 777          
BLAST of FC921234 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.407e-37
Identity = 77/228 (33.77%), Postives = 131/228 (57.46%), Query Frame = 1
Query:    1 FDGINLETAVEIKSNVFASIAGQITKDKHDFNIHSESAAAYVDPEGPTYCIGLDVQSSGKDMIYTVHGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGKRLKLAMNAGRMGGSGQVAYGGSFEAILRGADYPVRNDNISLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRKMGQVCIKLNSSAHMEIALLAVFSIFRGLLRRKAAENKAQRH 684
            ++G+N E    +K  +  S +GQ+TKDK D ++  E A++    EG +  +G D+Q++GK++ YT+   T+   F+ N    G+S+T  G+    G K+ED L+  KR ++ M+ G M   G VAYGG+ EA  R  DYP+     +L ++ + ++ ++ + G  QS+    R  N+   ANLN+R  GQV I++NSS  +++A++A+  +F+ LL   + E     H
Sbjct:  862 YEGVNAERLFVVKDKIPVSFSGQVTKDKKDAHVQLELASSVKHGEGRSTSLGFDMQNAGKELAYTIRSETRFNKFRKNKAAAGLSVTLLGDSVSAGLKVEDKLIANKRFRMVMSGGAMTSRGDVAYGGTLEAQFRDKDYPLGRFLSTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSIRVNSSEQLQLAVVALVPLFKKLLTYYSPEQMQYGH 1089          
BLAST of FC921234 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.144e-37
Identity = 74/216 (34.26%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    1 FDGINLETAVEIKSNVFASIAGQITKDKHDFNIHSESAAAYVDPEGPTYCIGLDVQSSGKDMIYTVHGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGKRLKLAMNAGRMGGSGQVAYGGSFEAILRGADYPVRNDNISLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRKMGQVCIKLNSSAHMEIALLAVFSIFRGLL 648
            ++G+N E    +K  +  S++GQ+TKDK D N+  E A++    EG +  +G D+Q+ GK++ YT+   T+  NF+ N    G+S+T  G+    G K+ED  +  K  ++ M+ G M   G  AYGG+ EA LR  DYP+     +L ++ + ++ ++ + G  QS+    R  N+   ANLN+R  GQV +++NSS  +++A++A+  +F+ LL
Sbjct:  980 YEGVNAERLFVVKEKIPISVSGQVTKDKKDANVQLEMASSVKHGEGKSTSLGFDMQTVGKELAYTLRSETRFNNFRRNKAAAGLSVTHLGDSVSAGLKVEDKFIASKWFRIVMSGGAMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSVRVNSSEQLQLAMVAIVPLFKKLL 1195          
BLAST of FC921234 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.248e-34
Identity = 77/227 (33.92%), Postives = 124/227 (54.63%), Query Frame = 1
Query:    1 FDGINLETAVEIKSNVFASIAGQITKDKHDFNIHSESAAAYVDPEGPTYCIGLDVQSSGKDMIYTVHGNTKLRNFKHNVTDCGVSLTSFGNKNYVGAKLEDSLLVGKRLKLAMNAGRMGGSGQVAYGGSFEAILRGADYPVRNDNISLTMTALSFNKEVVLTGGFQSEFRPIRGLNMSVNANLNSRKMGQVCIKLNSSAHMEIALLAVFSIFRGL---LRRKAAENK 672
            +DG+N E ++ + S   A+   Q+TKDK +FNIH +S+ +    E  +   G D+Q+ GK + Y V G TK +N + N T  G S+T  G     G KLED + +GKRL L  + G M   G  AYG + E  LR AD+P+  D  S  ++ + +  ++ L    QS+    R   +++ A LN++  GQ+ ++ +SS  ++IAL A+  I   +   +R +A  +K
Sbjct: 1273 YDGVNAEHSLALASRFPATATVQVTKDKKEFNIHLDSSVSAKHGENGSTMAGFDIQNVGKQLAYVVRGETKFKNLRKNKTTVGGSVTFLGENIATGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPIGQDQSSFGLSLVKWRGDLALGANLQSQVSVGRNSKIALRAGLNNKMSGQITVRTSSSDQLQIALTAILPIAMSIYKSIRPEATNDK 1499          
The following BLAST results are available for this feature:
BLAST of FC921234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TOC90_ARATH2.548e-7158.74Translocase of chloroplast 90, chloroplastic OS=Ar... [more]
TC120_ARATH2.407e-3733.77Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC132_ARATH3.144e-3734.26Translocase of chloroplast 132, chloroplastic OS=A... [more]
TC159_ARATH7.248e-3433.92Translocase of chloroplast 159, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC32102F12EF RVDevelopN Citrus clementina cDNA clone C32102F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921234 ID=FC921234; Name=FC921234; organism=Citrus clementina; type=EST; length=711bp
TTTGACGGAATAAACTTGGAGACAGCTGTGGAGATAAAAAGCAATGTCTT
TGCCTCCATTGCGGGACAGATAACCAAGGACAAGCATGATTTCAATATTC
ATTCTGAGAGTGCTGCAGCTTATGTAGATCCCGAGGGCCCCACCTACTGT
ATAGGTCTTGATGTTCAATCTTCTGGTAAAGATATGATCTATACTGTTCA
CGGCAACACTAAGCTGAGGAATTTTAAGCACAACGTTACTGACTGTGGGG
TTTCTTTGACATCATTCGGCAACAAGAATTATGTTGGTGCAAAGCTTGAA
GATAGTTTATTGGTTGGGAAAAGACTAAAGCTAGCCATGAATGCTGGCCG
AATGGGTGGTTCTGGACAAGTGGCATATGGTGGGAGTTTTGAAGCAATTT
TAAGAGGGGCGGACTACCCTGTGCGGAATGACAATATCAGTTTGACAATG
ACAGCTTTATCCTTTAATAAAGAGGTGGTGTTAACTGGAGGTTTCCAATC
TGAGTTCCGGCCGATCAGGGGCTTGAATATGTCGGTAAATGCCAACTTAA
ATAGCCGGAAAATGGGACAGGTATGTATAAAGTTGAATAGCTCTGCACAC
ATGGAAATTGCTCTGCTTGCAGTCTTCTCAATTTTCAGGGGCCTTTTACG
TAGAAAGGCAGCTGAAAACAAAGCACAGAGGCATTGGAGACAGGATAAGT
TTCATACTTCT
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