FC921239

Overview
NameFC921239
Unique NameFC921239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_MOUSE (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Mus musculus GN=Alg1 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.637e-31
Identity = 66/181 (36.46%), Postives = 108/181 (59.67%), Query Frame = 3
Query:   60 VQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSLAGTDVFLKPNRPAVVVSGTSWTPDEDFGILLEAALMYDRR 602
            +QNPP +P +    +   +  S  ++DWHN+GY+++ L  G R   V + +W EK++G++++ +LCV  AM+ +LA+NW ++A  LYD+P  FF  T L+ +HELF +L+   H     Q C   +  + +++  T     +G  V     RPA++VS TSWT DEDF ILL A   ++++
Sbjct:  129 LQNPPGLPAIAVCWFVGCICGSKLVIDWHNYGYSIMGLVHGPRHPIVLLAKWYEKFFGRLSHLNLCVTNAMREDLAENWCVRAVTLYDKPASFFKETPLDLQHELFMKLS---HTYSPFQSCSDPSHPDTERSAFTERDCQSGV-VRRLHGRPALLVSSTSWTEDEDFSILLRALEKFEQQ 305          
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_HUMAN (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Homo sapiens GN=ALG1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 66/182 (36.26%), Postives = 108/182 (59.34%), Query Frame = 3
Query:   60 VQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSL-AGTDVFLK-PNRPAVVVSGTSWTPDEDFGILLEAALMYDR 599
            +QNPP +P++    +   L  S  ++DWHN+GY+++ L  G     V + +W EK++G++++ +LCV  AM+ +LA NW I+A  +YD+P  FF  T L+ +H LF +L  ++H P       + +  E    + + FT   AG+ +  +   RPA++VS TSWT DEDF ILL A   +++
Sbjct:  129 LQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWYEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLG-SMHSPFR-----ARSEPEDPVTERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQ 304          
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_PONAB (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Pongo abelii GN=ALG1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.629e-29
Identity = 65/182 (35.71%), Postives = 107/182 (58.79%), Query Frame = 3
Query:   60 VQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSL-AGTDVFLK-PNRPAVVVSGTSWTPDEDFGILLEAALMYDR 599
            +QNPP +P++    +   L  S  ++DWHN+GY+++ L  G     V + +W E+++G++++ +LCV  AM+ +LA+NW I+A  +YD+P  FF  T L+ +H LF +L    H P       + +  E    + + FT   AG+ +  +   RPA++VS TSWT DEDF ILL A   +++
Sbjct:  129 LQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWYERFFGRLSHLNLCVTNAMREDLAENWHIRAVTVYDKPASFFKETPLDLQHRLFMKLG-GTHSPFR-----ARSEPEDPATERSAFTERDAGSGLVTRLHERPALLVSSTSWTEDEDFSILLAALEKFEQ 304          
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_DICDI (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Dictyostelium discoideum GN=alg1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.103e-21
Identity = 60/198 (30.30%), Postives = 104/198 (52.53%), Query Frame = 3
Query:   21 VSLRKIASP-DVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSH--FVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGIKAT--VLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSLAGTDVFLKP-NRPAVVVSGTSWTPDEDFGILLEAALMYD 596
            V L K+ SP +  LVQ+PP++PT+  ++    +R    ++DWHN GYTLL LSL +  +   + + ++IE+Y+ K A   L V   M+ +L ++W +K    V +D+    F   +  E+ E              ++  ++   ++G+  D+    S+        P  + ++++S TSWT DEDF ILL+A + YD
Sbjct:   98 VLLVKVPSPLNTILVQSPPAIPTIFVMQIVCWIRGVHLVIDWHNLGYTLLKLSLSKSDNHPIIRLAKFIERYFAKNAYAHLFVTNEMKIQLVRDWNLKGKTFVFHDKASPIFKSLTDREQEEF-------------LKTFINKYSIKGE--DKVYIESVISKKSIRNPKQQTSIIISSTSWTQDEDFSILLDAIVKYD 280          
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_SCHPO (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Schizosaccharomyces pombe GN=alg1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.382e-20
Identity = 60/190 (31.58%), Postives = 91/190 (47.89%), Query Frame = 3
Query:   36 IASPDVFL-VQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSLAGTDVFLKPNRPAVVVSGTSWTPDEDFGILLEAALMYDR 599
            +  P  FL +QNPP +P     +    LR + FI+DWHNFGY++L+L LG++  FV + +  EKY  + A   L V++ M+ ++ Q WG+    V YD+PP  F P   E+K ++                                  S+        P+   ++++ TSWTPDED  IL EA   YD+
Sbjct:  117 VRKPASFLFIQNPPCIPVFFIAQCLHILRGTKFIIDWHNFGYSILALKLGKQHTFVKLLKIYEKYMARGAYAHLTVSKRMK-DVLQTWGMNPCYVCYDRPPNHFTPIKNEQKKQM----------------------------------SIKKIPCEYNPSSTKLLITSTSWTPDEDIYILWEALNEYDK 271          
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_YARLI (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Yarrowia lipolytica GN=ALG1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 65/202 (32.18%), Postives = 97/202 (48.02%), Query Frame = 3
Query:    9 HASLVSLR-KIASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGI---KATVLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSLAGTDVFLKPNRPAVVVSGTSWTPDEDFGILLEAALMYD 596
            H  L+SL  K+   D  LVQNPPS+PTL  V++ +     R+  ++DWHNFGYT+L+L L      V   ++ E ++G  A   LCV   M   + + +G+   +   L+D+P   F P S  EK ++     + L+              +   AD  I                  +VS TS+TPDE+F ILL+A  +YD
Sbjct:  118 HWLLISLLYKLRGADYLLVQNPPSIPTLGVVRFYNLFLSTRTKVVLDWHNFGYTILALKLPETHPMVKFAKFYEGFFGGRAFVHLCVTVLMGQAMRKTFGMSGRRIVPLHDRPAFHFKPLSESEKLDVLRDFKETLY--------------DDMTADHKI------------------IVSSTSYTPDENFNILLDALALYD 287          
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_CANAL (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Candida albicans GN=ALG1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 61/189 (32.28%), Postives = 90/189 (47.62%), Query Frame = 3
Query:   48 DVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSH-FVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGI---KATVLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSLAGTDVFLKPNRPAVVVSGTSWTPDEDFGILLEAALMYD 596
            D  ++QNPPS+P L+ V    ++  R +  I+DWHN  YT+L+L     +H FV + +  EK  G+ AN ++ V ++M+  L + +G    K   LYD+P   F P  L  K E                       M   K  E I       D+     +  V++S TS+TPDEDF ILL+A   Y+
Sbjct:  144 DYIMIQNPPSIPILLIVILFKTVFSRETKLIIDWHNLNYTILNLRYNNLNHPFVKLVKLYEKILGQFANLNITVTKSMKKYLVKEFGFQKSKIVTLYDRPGVQFQP--LSNKREF----------------------MSEHKLFEDI-------DI----EKYKVLISSTSFTPDEDFNILLDALKNYE 297          
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_ASHGO (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Ashbya gossypii GN=ALG1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 59/191 (30.89%), Postives = 88/191 (46.07%), Query Frame = 3
Query:   48 DVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSH-FVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGIKA---TVLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSLAGTDVFLKPNRPAVVVSGTSWTPDEDFGILLEAALMYDRRVA 608
            D  L+QNPPS+P L  V     L R+  I+DWHNF YT+L L +GR  H  V +   +E  + +MA+  + V  AM+  L Q++ + A    V+YD+P E F P    E+           + P         AG + Q+ D                    ++V+ TS+T DED  +L  A  +Y+   A
Sbjct:  153 DYILIQNPPSIPLLPIVAIFKVLTRTRLILDWHNFAYTVLQLRVGRFLHPLVLVSYAVEFLFSRMADYHITVTAAMKDYLVQSFLLPARRIAVMYDRPGEQFRPLPAGERGAALAEPFIRGYIP---------AGFDVQRGD-------------------TILVTSTSFTLDEDINVLFGALKIYESAAA 315          
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_CANGA (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Candida glabrata GN=ALG1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.307e-14
Identity = 59/201 (29.35%), Postives = 96/201 (47.76%), Query Frame = 3
Query:   12 ASLVSLRKIASPDVFLVQNPPSVPTL-VAVKWASSLRRSAFIVDWHNFGYTLLSLSL-GRRSHFVSIYRWIEKY-YGKMANGSLCVAQAMQHELAQNWGI---KATVLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSLAGTDVFLKPNRPAVVVSGTSWTPDEDFGILLEAALMYD 596
            A +  L ++   +  L+QNPPS+P L +AV +   L     I+DWHN  Y+++ L   G   H V +  ++ +Y +GK A  +L V +AM+  L  ++G+   +  VLYD+P   F P +  E           L     ++D +   G   +K D+                   ++V+ TS+TPDED  IL+ A  +YD
Sbjct:  121 AIIAQLWELRGSNYMLIQNPPSIPILPIAVFY--RLSGCKLIIDWHNLAYSIMQLKFNGNFYHPVVLASYVIEYIFGKFATYNLTVTEAMKEYLVNSFGLNPKRCVVLYDRPATQFKPLTESES-------RTKLLDSEFIRDMIPE-GFNVEKGDK-------------------IIVTSTSFTPDEDISILIGALKIYD 292          
BLAST of FC921239 vs. ExPASy Swiss-Prot
Match: ALG1_YEAST (Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Saccharomyces cerevisiae GN=ALG1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 60/196 (30.61%), Postives = 96/196 (48.98%), Query Frame = 3
Query:   27 LRKIASPDVFLVQNPPSVPTL-VAVKWASSLRRSAFIVDWHNFGYTLLSLSL-GRRSH-FVSIYRWIEKYYGKMANGSLCVAQAMQHELAQNWGI---KATVLYDQPPEFFHPTSLEEKHELFCRLNKNLHQPLGVQDCVSNAGMEGQKADETIFTSLAGTDVFLKPNRPAVVVSGTSWTPDEDFGILLEAALMYD 596
            L ++   D  LVQNPPS+P L +AV +   L     I+DWHN  Y++L L   G   H  V I   +E  + K A+ +L V +AM+  L Q++ +   +  VLYD+P   F P + +   +      K L     +++ + +   + +K D+                   ++V+ TS+TPDED GILL A  +Y+
Sbjct:  124 LWELRGSDYILVQNPPSIPILPIAVLY--KLTGCKLIIDWHNLAYSILQLKFKGNFYHPLVLISYMVEMIFSKFADYNLTVTEAMRKYLIQSFHLNPKRCAVLYDRPASQFQPLAGDISRQ------KALTTKAFIKNYIRD-DFDTEKGDK-------------------IIVTSTSFTPDEDIGILLGALKIYE 291          
The following BLAST results are available for this feature:
BLAST of FC921239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ALG1_MOUSE8.637e-3136.46Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
ALG1_HUMAN5.598e-3036.26Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
ALG1_PONAB1.629e-2935.71Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
ALG1_DICDI8.103e-2130.30Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
ALG1_SCHPO1.382e-2031.58Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
ALG1_YARLI4.446e-1932.18Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
ALG1_CANAL1.025e-1532.28Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
ALG1_ASHGO2.982e-1530.89Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
ALG1_CANGA4.307e-1429.35Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]
ALG1_YEAST1.636e-1330.61Chitobiosyldiphosphodolichol beta-mannosyltransfer... [more]

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Properties
Property NameValue
Genbank descriptionC32102G05EF RVDevelopN Citrus clementina cDNA clone C32102G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921239 ID=FC921239; Name=FC921239; organism=Citrus clementina; type=EST; length=667bp
CAGTTTTTCATGCTTCTTTGGTTTCTTTGCGTAAAATTGCATCTCCTGAT
GTATTTTTGGTGCAGAATCCCCCTTCTGTTCCAACCTTAGTGGCTGTAAA
ATGGGCAAGTTCACTTAGGCGATCGGCATTTATCGTTGATTGGCATAATT
TTGGATATACGTTGCTCAGTTTGTCCCTTGGAAGAAGAAGTCACTTTGTT
TCAATATACCGATGGATTGAGAAGTATTATGGGAAGATGGCAAATGGTTC
TCTTTGTGTAGCACAAGCAATGCAACATGAATTGGCTCAAAACTGGGGAA
TTAAAGCCACTGTATTGTATGATCAGCCGCCTGAATTCTTTCATCCTACA
TCACTTGAGGAGAAGCATGAGTTGTTCTGTAGATTGAACAAGAACCTACA
TCAGCCTCTGGGTGTTCAAGATTGTGTCAGTAATGCAGGAATGGAAGGCC
AGAAGGCAGATGAGACTATATTCACTAGTCTGGCTGGCACTGATGTTTTC
TTGAAGCCAAACAGACCTGCCGTTGTTGTAAGCGGCACAAGTTGGACTCC
AGATGAAGATTTTGGTATTCTTTTGGAAGCAGCACTAATGTATGATAGAC
GTGTTGCTGCAATACTGAATGAAGATGAATTCACTAATGAAGAGGTTTTT
TTGAAAGGAATTTCTGA
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