FC921245

Overview
NameFC921245
Unique NameFC921245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:42..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.213e-87
Identity = 153/181 (84.53%), Postives = 159/181 (87.85%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            T+KIIAEYIWIGGSG+D+RSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIFSH DVVAEEPWYGIEQEYTLLQKDV WPL                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPG
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.587e-86
Identity = 151/181 (83.43%), Postives = 159/181 (87.85%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            T+KIIAEYIWIGGSG+D+RSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSH DVVAE PWYGIEQEYTLLQKD+ WPL                   ADKA+GRDIVDSHYKACLYAGINISGINGEVMPG
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 317.39 bits (812), Expect = 4.413e-86
Identity = 150/181 (82.87%), Postives = 159/181 (87.85%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDKIIAEYIW+GGSGMDMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAK+FS+ DV AE PWYGIEQEYTLLQKDVKWP+                   ADK++GRD+VDSHYKACLYAGINISGINGEVMPG
Sbjct:   16 TDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVFSNPDVAAEVPWYGIEQEYTLLQKDVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 4.879e-85
Identity = 148/181 (81.77%), Postives = 159/181 (87.85%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDKIIAEYIWIGGSG+DMRSKARTLPGPVSDPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFRRG+NILV+CDAYTPAGEPIPTNKRHAAAK+FSH DVVAE PWYGIEQEYTLLQK+V WP+                   ADKA+GRDIVD+HYKACLYAG+NISGINGEVMPG
Sbjct:   16 TDKIIAEYIWIGGSGLDMRSKARTLPGPVSDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGSNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEVPWYGIEQEYTLLQKEVNWPVGWPIGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.854e-84
Identity = 150/181 (82.87%), Postives = 158/181 (87.29%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            T+KIIAEYIWIGGSGMD+RSKARTL GPV+DP+KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS+ DVVAEEPWYGIEQEYTLLQ+D+ WPL                   ADKA+GRDIVDSHYKA LYAGINISGINGEVMPG
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSNPDVVAEEPWYGIEQEYTLLQRDINWPLGWPIGGFPGPQGPYYCGTGADKAFGRDIVDSHYKAYLYAGINISGINGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.202e-83
Identity = 146/181 (80.66%), Postives = 154/181 (85.08%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            T+K+I EYIW+GGSGMD+RSKARTL GPVSDP+KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR  AAKIFSH DV AE PWYGIEQEYTLLQK+VKWP+                   ADKAWGRDIVD+HYKACLYAGINISGINGEVMPG
Sbjct:   16 TEKVIVEYIWVGGSGMDLRSKARTLSGPVSDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRCNAAKIFSHPDVAAEVPWYGIEQEYTLLQKEVKWPIGWPVGGFPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.570e-83
Identity = 146/181 (80.66%), Postives = 156/181 (86.19%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TDK+IAEYIW+GGSGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRG+NILVMCDAYTPAGEPIPTNKR+ AAKIF H DV AEEPWYG+EQEYTLLQKDV+WPL                   A+KA+GRDIVDSHYKAC+YAGINISGINGEVMPG
Sbjct:   16 TDKVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIFGHPDVAAEEPWYGLEQEYTLLQKDVQWPLGWPLGGFPGPQGPYYCGTGANKAFGRDIVDSHYKACIYAGINISGINGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.570e-83
Identity = 146/181 (80.66%), Postives = 156/181 (86.19%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            TD+IIAEYIWIGGSG+DMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF    VVAEE WYGIEQEYTLLQKD+KWP+                   ADKA+GRDIVDSHYKACLYAGIN+SG NGEVMPG
Sbjct:   16 TDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFEDPSVVAEETWYGIEQEYTLLQKDIKWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDSHYKACLYAGINVSGTNGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.677e-83
Identity = 148/181 (81.77%), Postives = 154/181 (85.08%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            T+KIIAEYIWIGGSGMD+RSKARTL GPVSDP KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKRH AAKIFSH +V+AEE WYGIEQEYTLLQ  VKWP+                   ADKA+GRDIVDSHYKACLYAGINISGINGEVMPG
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVSDPHKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHNAAKIFSHPEVLAEETWYGIEQEYTLLQNSVKWPIGWPVGGYPGPQGPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEVMPG 196
[Close]
BLAST of FC921245 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 2.677e-83
Identity = 146/181 (80.66%), Postives = 158/181 (87.29%), Query Frame = 3 
Query:  138 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPG 680
            ++KIIAEYIW+GGSGMDMRSKARTLPGPV+DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAA+IF++ DV+AE PWYGIEQEYTLLQKDV WPL                   ADK++GRDIVD+HYKA LYAGINISGINGEVMPG
Sbjct:   16 SEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIFANPDVIAEVPWYGIEQEYTLLQKDVNWPLGWPIGGFPGPQGPYYCSIGADKSFGRDIVDAHYKASLYAGINISGINGEVMPG 196
The following BLAST results are available for this feature:
BLAST of FC921245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_VIGAC5.213e-8784.53Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_MEDSA2.587e-8683.43Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLN11_ARATH4.413e-8682.87Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA1_LOTJA4.879e-8581.77Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_NICPL1.854e-8482.87Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA1_VITVI1.202e-8380.66Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA2_SOYBN1.570e-8380.66Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLN14_ARATH1.570e-8380.66Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLNA2_VITVI2.677e-8381.77Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLN12_ARATH2.677e-8380.66Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC32102G11EF RVDevelopN Citrus clementina cDNA clone C32102G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921245 ID=FC921245; Name=FC921245; organism=Citrus clementina; type=EST; length=680bp
GGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATTAC
CAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCT
GCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCA
TCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAA
GCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTG
GAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAG
TGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAAC
AATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCC
AACAAACAAAAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTG
TGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAG
AAGGATGTTAAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCC
TCAGGGACCATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCG
ACATTGTAGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATC
AGTGGCATCAATGGAGAAGTCATGCCGGGG
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