FC921257

Overview
NameFC921257
Unique NameFC921257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921257_ssr29 microsatellite FC921257_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14277 contig Ccv1_Contig14277:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LAG12_ARATH (LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.891e-48
Identity = 90/170 (52.94%), Postives = 112/170 (65.88%), Query Frame = 3
Query:  192 DPIRSESIQPDAWHFVVPLLFAPGFLVAXXXXXXXXXXXXXXXXXNKGRPQLKINET-TRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            DP+   S++   WHF + + FA GF                    + G   +K+N+  TRAKI KC ES+WKL YYA  +F +L++   EPW  D  LYF GWPNQELKL I LYYMCQCGFY+Y +AALL WETRRKDFAVMM+HHVIT++L+ YSY T  F+IG+IIL
Sbjct:   10 DPVVKPSME--VWHFQIAVYFAFGFFFLRLVLDRYVFQRIALWLLSTGSAPIKLNDAATRAKIVKCKESLWKLLYYAACDFFVLQVIYHEPWARDIKLYFHGWPNQELKLSIKLYYMCQCGFYVYGVAALLAWETRRKDFAVMMSHHVITIILLSYSYLTSFFRIGAIIL 177          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: ASCL3_ORYSJ (ASC1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0264000 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.823e-40
Identity = 80/155 (51.61%), Postives = 102/155 (65.81%), Query Frame = 3
Query:  234 FVVPLLFAPGFLVAXXXXXXXXXXXXXXXXXNKGRPQLKINETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            F + L+F+ GF  A                 +    +L  +E  +AKI K SES+WKLTYY +V+  +L I   EPW  DT  YF+GWPNQ +   +ML+YMCQCGFYIYSI AL+ WETRRKDFAVMM+HHV+T +LIGY+Y T  F+IG+IIL
Sbjct:   12 FPLTLVFSVGFFCARFFLDRLVYKPLAAYCFSSKASKLMNDEVRQAKIVKFSESIWKLTYYGSVQAWVLLIIKQEPWSLDTMQYFEGWPNQYMTSSLMLFYMCQCGFYIYSIFALVAWETRRKDFAVMMSHHVVTSILIGYAYLTGFFRIGTIIL 166          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: ASC1_SOLLC (Protein ASC1 OS=Solanum lycopersicum GN=Asc-1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.783e-25
Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  366 RAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKG-----WPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            R KI+K  ES WK  Y+ + E   L + C+EPWFTD+  ++ G     WPN ++KL + L YM   GFY YSI A L WETRR DFA  + HHV TV LI  SY     +IGS++L
Sbjct:   69 RKKINKFKESAWKFVYFLSAELLALSVTCNEPWFTDSRYFWAGPGDVVWPNLKMKLKLKLLYMYAGGFYFYSIFATLYWETRRYDFAAQIIHHVTTVSLIVLSYVYGFARIGSVVL 184          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: ASCL1_ORYSJ (ASC1-like protein 1 OS=Oryza sativa subsp. japonica GN=Os02g0581300 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 56/119 (47.06%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  357 ETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKG-----WPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            E TR KI K  ES WK  Y+ + E   L +  +EPWFT+T  ++ G     WP+Q++K  +   YM   GFY YSI AL+ WETRR DF V M+HHV TV LI  SY  R  ++GS++L
Sbjct:   68 EETRKKIRKFKESAWKCVYFLSGEILSLSVTYNEPWFTNTKYFWVGPGDQVWPDQKIKWKLKAVYMYAAGFYTYSIFALMFWETRRSDFGVSMSHHVATVALIVLSYVFRFARVGSVVL 186          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LAG13_ARATH (LAG1 longevity assurance homolog 3 OS=Arabidopsis thaliana GN=At1g13580 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  366 RAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKG-----WPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            + KI K  ES WK  YY + E   L +  +EPWF +T  ++ G     WP+Q+ KL + L YM   GFY YSI AL+ WETRR DF V M HH+ T++LI  SY     ++GS++L
Sbjct:   69 KKKIRKFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLYMFVAGFYTYSIFALVFWETRRSDFGVSMGHHIATLILIVLSYVCSFSRVGSVVL 184          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LAG11_ARATH (LAG1 longevity assurance homolog 1 OS=Arabidopsis thaliana GN=LAG1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 53/123 (43.09%), Postives = 73/123 (59.35%), Query Frame = 3
Query:  345 LKINETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKG-----WPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            +K  +    K+ K  ES WK  YY + E   L +  +EPWF++T  ++ G     WP+Q +K+ +   YM   GFY YSI AL+ WETRR DF V M HH+ T++LI  SY  RL + GS+IL
Sbjct:   65 IKDRKKNSPKVRKFKESAWKCIYYLSAELLALSVTYNEPWFSNTLYFWIGPGDQIWPDQPMKMKLKFLYMFAAGFYTYSIFALVFWETRRSDFGVSMGHHITTLVLIVLSYICRLTRAGSVIL 187          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: ASCL2_ORYSJ (ASC1-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0728300 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  366 RAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKG-----WPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            R KI K  ES WK  Y+ + E   L +   E WFT T  ++ G     WP+Q +K  + L YM   GFY YSI AL  WE +R DF + M HHV++V+LI  SY  R  ++GSI+L
Sbjct:   64 RIKIRKFKESAWKCIYFLSAELLALSVTYKESWFTSTKNFWVGPGDQVWPDQRIKFKLKLVYMYAAGFYTYSIFALQFWEIKRSDFGISMVHHVVSVILIALSYIFRFARVGSIVL 179          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: ASCL_SOLLC (ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22
Identity = 55/122 (45.08%), Postives = 72/122 (59.02%), Query Frame = 3
Query:  354 NETT--RAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKG-----WPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIIL 698
            NET   R +I K  ES WK  Y+ + E   L +  +EPWFT+T  ++ G     WP+Q  K  +   YM   GFY YSI AL+ WETRR DF V M+HHV T +LI  SY  R  ++GS++L
Sbjct:   62 NETDDRRRRIRKFKESAWKCIYFLSAEVFALVVTYNEPWFTNTRYFWVGPGDQVWPDQMYKSKLKALYMYTGGFYTYSIFALIFWETRRSDFGVSMSHHVATAILIVLSYNIRFARVGSVVL 183          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS5_MOUSE (LAG1 longevity assurance homolog 5 OS=Mus musculus GN=Lass5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  354 NETTRAKISKCSESMWKLTYYATVEFCI-LKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSII 695
            N+     ++K  ESMW+ TYY  + FC  ++     PWF DT   +  +P Q L   +  YY+ Q  FY +S+      + +RKDF +M  HH+I ++L  +SY   + ++G++I
Sbjct:  131 NQDKPPTLTKFCESMWRFTYYLCI-FCYGIRFLWSMPWFWDTRQCWYNYPYQPLSRELYYYYITQLAFY-WSLMFSQFIDVKRKDFLMMFIHHMIGIMLTTFSYVNNMVRVGALI 243          
BLAST of FC921257 vs. ExPASy Swiss-Prot
Match: LASS4_BOVIN (LAG1 longevity assurance homolog 4 OS=Bos taurus GN=LASS4 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  354 NETTRAKISKCSESMWKLTYYATVEFCILKIACDEPWFTDTNLYFKGWPNQELKLPIMLYYMCQCGFYIYSIAALLTWETRRKDFAVMMAHHVITVLLIGYSYFTRLFQIGSIILL 701
            N+       K  ES WK  +Y     C   +   E W       ++ +P+Q LK  +  +Y+ +  FYI S+   L ++T+RKDF   + HH +T++LI +SY   L +IGS++LL
Sbjct:  123 NQDRPCLTKKFCESSWKFVFYLCCFVCGTMVLYHESWLWTPVKCWENYPHQPLKPGLYHWYLLELSFYI-SLLMTLPFDTKRKDFKEQVIHHFVTIILISFSYSLNLLRIGSLVLL 237          
The following BLAST results are available for this feature:
BLAST of FC921257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LAG12_ARATH8.891e-4852.94LAG1 longevity assurance homolog 2 OS=Arabidopsis ... [more]
ASCL3_ORYSJ6.823e-4051.61ASC1-like protein 3 OS=Oryza sativa subsp. japonic... [more]
ASC1_SOLLC2.783e-2548.28Protein ASC1 OS=Solanum lycopersicum GN=Asc-1 PE=2... [more]
ASCL1_ORYSJ3.635e-2547.06ASC1-like protein 1 OS=Oryza sativa subsp. japonic... [more]
LAG13_ARATH5.248e-2444.83LAG1 longevity assurance homolog 3 OS=Arabidopsis ... [more]
LAG11_ARATH6.855e-2443.09LAG1 longevity assurance homolog 1 OS=Arabidopsis ... [more]
ASCL2_ORYSJ7.579e-2343.97ASC1-like protein 2 OS=Oryza sativa subsp. japonic... [more]
ASCL_SOLLC1.293e-2245.08ASC1-like protein OS=Solanum lycopersicum PE=2 SV=... [more]
LASS5_MOUSE3.192e-1333.04LAG1 longevity assurance homolog 5 OS=Mus musculus... [more]
LASS4_BOVIN3.192e-1332.76LAG1 longevity assurance homolog 4 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionC32102H11EF RVDevelopN Citrus clementina cDNA clone C32102H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921257 ID=FC921257; Name=FC921257; organism=Citrus clementina; type=EST; length=716bp
GAAACACGGCTCAAAGATCAAAATTCTCTTCTTTCTTTCTTCCCCTTTTT
TTCAACAAATTAAACTCTTCTTTTGCGCAAAATTAGCTCGAAAATTAAAA
TGCGGTTGTTTTCATTTTCGGCGACGATTAATTGGATTTGTTTTTAGTTT
AACTTTTGTCGTTCTGAATATTGACTCGAAAATCGCGCATGGACCCGATC
CGTAGTGAGAGTATACAGCCGGACGCGTGGCATTTCGTCGTCCCTTTACT
CTTCGCTCCCGGCTTCCTCGTCGCCAGGTTCTTTTTGGATAGATTCATCT
TTCGAAGGCTAGCTCTCCGGTTGTTGAATAAAGGACGTCCCCAGTTGAAG
ATAAATGAAACTACAAGGGCAAAAATTAGCAAATGTTCAGAATCTATGTG
GAAGCTGACATACTATGCTACTGTTGAGTTCTGTATTCTCAAAATTGCCT
GCGATGAGCCATGGTTCACAGATACAAACTTGTACTTCAAAGGCTGGCCA
AATCAAGAGTTGAAGCTTCCTATAATGCTTTATTACATGTGCCAATGTGG
ATTCTATATCTATAGCATTGCTGCACTTCTTACATGGGAGACTCGAAGGA
AGGATTTCGCTGTGATGATGGCTCATCATGTAATTACTGTTCTCCTGATT
GGATACTCATATTTTACTAGGCTTTTCCAGATTGGCTCTATTATCTTGCT
CTGCATGATGCAGTGA
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