FC921266

Overview
NameFC921266
Unique NameFC921266
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921266_ssr32 microsatellite FC921266_ssr32:32..53. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6553 contig Ccv1_Contig6553:80..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.266e-48
Identity = 95/171 (55.56%), Postives = 121/171 (70.76%), Query Frame = 2
Query:  170 EFSIVGYSLEVLTSTDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGKSTAL 682
            +FSIVGY+ E LT+TDKL+ELFESWM +H K+++S EEK+HR E+F++NL HID RN E+   +SYWLGLNEF+D++HEEFK +YL   KP                       +F Y+++ DLP+SVDWRKKGAV  VK+Q  CG CWAFS VAAVEGINQI TG  ++L
Sbjct:   30 DFSIVGYTPEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEI---NSYWLGLNEFADLTHEEFKGRYLGLAKPQ-------------FSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSL 184          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.235e-45
Identity = 98/175 (56.00%), Postives = 117/175 (66.86%), Query Frame = 2
Query:  170 EFSIVGYSLEVLTSTDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPD----DDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGKSTAL 682
            ++SIVGYS E L S DKL+ELFE+W+    K++E+ EEK  R E+FKDNLKHID  N++     SYWLGLNEF+D+SHEEFK  YL GLK D    D+E                    F Y++VE +P+SVDWRKKGAV  VKNQ  CG CWAFS VAAVEGIN+IVTG  T L
Sbjct:   30 DYSIVGYSPEDLESHDKLIELFENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKK---GKSYWLGLNEFADLSHEEFKKMYL-GLKTDIVRRDEE---------------RSYAEFAYRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTL 185          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 9.391e-44
Identity = 89/171 (52.05%), Postives = 116/171 (67.84%), Query Frame = 2
Query:  170 EFSIVGYSLEVLTSTDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGKSTAL 682
            +FSIVGYS + LTST++L++LF SWMLKH K++++ +EKL+R EIFKDNLK+ID RN+   + + YWLGLNEFSD+S++EFK KY+  L  D                       F+ +++ DLP+SVDWR KGAVT VK+Q  C  CWAFS VA VEGIN+I TG    L
Sbjct:   27 DFSIVGYSQDDLTSTERLIQLFNSWMLKHNKNYKNVDEKLYRFEIFKDNLKYIDERNK---MINGYWLGLNEFSDLSNDEFKEKYVGSLPED--------------YTNQPYDEEFVNEDIVDLPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVEL 180          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.087e-43
Identity = 88/172 (51.16%), Postives = 116/172 (67.44%), Query Frame = 2
Query:  167 GEFSIVGYSLEVLTSTDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGKSTAL 682
            G+FSIVGYS + LTST++L++LF SWML H K +E+ +EKL+R EIFKDNL +ID  N++    +SYWLGLNEF+D+S++EF  KY+  L     E                    F+ ++  +LP++VDWRKKGAVT V++Q  CG CWAFSAVA VEGIN+I TGK   L
Sbjct:   26 GDFSIVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK---NNSYWLGLNEFADLSNDEFNEKYVGSLIDATIE--------------QSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVEL 180          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.356e-42
Identity = 88/173 (50.87%), Postives = 116/173 (67.05%), Query Frame = 2
Query:  170 EFSIVGYSLEVLTSTDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL-------TGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTG 667
            +F  VGYS + LTS ++L++LF+SWMLKH K +ES +EK++R EIF+DNL +ID  N++    +SYWLGLN F+D+S++EFK KY+       TGL+  D+E                    F YK+V + PQS+DWR KGAVT VKNQ  CG CWAFS +A VEGIN+IVTG
Sbjct:   27 DFYTVGYSQDDLTSIERLIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKK---NNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLEHFDNE-------------------DFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTG 177          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 83/167 (49.70%), Postives = 109/167 (65.27%), Query Frame = 2
Query:  167 GEFSIVGYSLEVLTSTDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTG 667
            G+FSIVGYS   LTST++L++LFESWMLKH K +++ +EK++R EIFKDNLK+ID  N++    +SYWLGLN F+DMS++EFK KY   +  +                        L     ++P+ VDWR+KGAVT VKNQ  CG CWAFSAV  +EGI +I TG
Sbjct:   26 GDFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK---NNSYWLGLNVFADMSNDEFKEKYTGSIAGN-------------YTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTG 176          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.609e-27
Identity = 69/174 (39.66%), Postives = 99/174 (56.90%), Query Frame = 2
Query:  170 EFSIVGYSLEVLTSTD------KLVELFESWMLKHGK--SHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTG 667
            + SI+ Y  +   ST       +++ ++E+W++KHGK  S  S  EK  R EIFKDNL+ +D  N +     SY LGL  F+D++++E+++KYL        E                    +  +  ++LP+S+DWRKKGAV  VK+Q  CG CWAFS + AVEGINQIVTG
Sbjct:   23 DMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKAQSQNSLVEKDRRFEIFKDNLRFVDEHNEK---NLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSL--------------RYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTG 179          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27
Identity = 69/172 (40.12%), Postives = 97/172 (56.40%), Query Frame = 2
Query:  170 EFSIVGYSLEVLTSTDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGKSTAL 682
            + SIV Y      S ++   L+  W  +HGKS+ +  E+  R   F+DNL++ID  N        S+ LGLN F+D+++EE+++ YL GL+                       + +L  + E LP+SVDWR KGAV  +K+Q  CG CWAFSA+AAVEGINQIVTG   +L
Sbjct:   22 DMSIVSYGER---SEEEARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYL-GLR-------------NKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISL 176          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26
Identity = 62/156 (39.74%), Postives = 92/156 (58.97%), Query Frame = 2
Query:  215 DKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGKSTAL 682
            D +++ FE WM ++G+ ++  +EK+ R +IFK+N+KHI+  N   +  +SY LG+N+F+DM+  EF  +Y     P + E                    F   N+  +PQS+DWR  GAV  VKNQNPCG CW+F+A+A VEGI +I TG   +L
Sbjct:   31 DPMMKRFEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNE--NSYTLGINQFTDMTKSEFVAQYTGVSLPLNIEREPVVS--------------FDDVNISAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSL 170          
BLAST of FC921266 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 63/153 (41.18%), Postives = 91/153 (59.48%), Query Frame = 2
Query:  209 STDKLVELFESWMLKHGKSHESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPDDDEFXXXXXXXXXXXXXXXXXNHFLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTG 667
            + D++  ++ESW++K+GKS+ S  E   R EIFK+ L+ ID  N +     SY +GLN+F+D++ EEF++ YL G     ++                  N +  +  + LP  VDWR  GAV  +K+Q  CGGCWAFSA+A VEGIN+IVTG
Sbjct:   34 TNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTN--RSYKVGLNQFADLTDEEFRSTYL-GFTSGSNK--------------TKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTG 169          
The following BLAST results are available for this feature:
BLAST of FC921266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
XCP1_ARATH1.266e-4855.56Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
XCP2_ARATH2.235e-4556.00Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
PAPA4_CARPA9.391e-4452.05Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
PAPA3_CARPA6.087e-4351.16Caricain OS=Carica papaya PE=1 SV=2[more]
PAPA2_CARPA1.356e-4250.87Chymopapain OS=Carica papaya PE=1 SV=2[more]
PAPA1_CARPA1.403e-3949.70Papain OS=Carica papaya PE=1 SV=1[more]
RD21A_ARATH1.609e-2739.66Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ4.682e-2740.12Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
BROM1_ANACO2.324e-2639.74Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
ACTN_ACTDE3.035e-2641.18Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32103A08EF RVDevelopN Citrus clementina cDNA clone C32103A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921266 ID=FC921266; Name=FC921266; organism=Citrus clementina; type=EST; length=683bp
GAAGTAATTAACTTGAAGATAAAGGGTGGGGGAGAGAGAGAGAGAGAGAG
AGATGAAAATGTTATCTTCCAATTGTAAGTTGTTGCTTCGTCTTTCTTTG
TGCGTGTCTCTCTTGATGATCATATGCATACGCTGCTCTAGCAGTAGAAC
TCTTCAAGGTCATGATGGTGAGTTCTCCATTGTGGGGTATTCACTAGAGG
TGTTGACATCCACGGACAAGCTGGTTGAGCTATTCGAGTCATGGATGTTG
AAACATGGGAAATCGCATGAAAGCACGGAAGAGAAGTTGCATAGATTGGA
GATATTCAAAGACAACTTGAAGCACATTGATGCGAGGAACAGAGAGCTGC
AAATTACTAGTAGCTATTGGCTTGGTCTGAATGAGTTTTCAGATATGAGC
CACGAAGAGTTCAAGAACAAGTACTTAACAGGACTCAAACCCGATGATGA
TGAGTTCCGCAGAAGGAGTCACCGCGACTCCAGTAGTAGATCTTCTGCTA
GCAGTAGTAATCATTTTTTGTACAAAAATGTAGAGGATTTGCCTCAATCC
GTTGACTGGAGGAAGAAAGGAGCTGTCACTCATGTCAAAAACCAAAATCC
TTGTGGTGGATGTTGGGCATTTTCAGCAGTAGCAGCAGTGGAGGGGATAA
ATCAGATAGTGACGGGAAAATCTACGGCGTTGT
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