FC921268

Overview
NameFC921268
Unique NameFC921268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921268_ssr55 microsatellite FC921268_ssr55:55..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7698 contig Ccv1_Contig7698:464..1179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PINI_ARATH (Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.681e-92
Identity = 163/186 (87.63%), Postives = 176/186 (94.62%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713
            MIT ADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFI++N+PY MNLRF+AAD+LQK+IVL +L +W KLS+ G L+WTITLFS+STLPNTLVMGIPLLKGMYG FSG LMVQIVVLQCIIWYTLMLF+FEYRGA+LLISE FPDTAGSIVSIHVDSDIMSLDG
Sbjct:    1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIAANNPYAMNLRFLAADSLQKVIVLSLLFLWCKLSRNGSLDWTITLFSLSTLPNTLVMGIPLLKGMYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYRGAKLLISEQFPDTAGSIVSIHVDSDIMSLDG 186          
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.711e-91
Identity = 163/186 (87.63%), Postives = 177/186 (95.16%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713
            MIT ADFYHVMTAMVPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFIS+N+PY MNLRFIAADTLQK+IVL +L +WS LS+RG LEWTITLFS+STLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGAR+LI+E FPDTAG+I SI VD+D++SLDG
Sbjct:    1 MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARILITEQFPDTAGAIASIVVDADVVSLDG 186          
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN1_ORYSJ (Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.227e-90
Identity = 161/186 (86.56%), Postives = 174/186 (93.55%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713
            MIT ADFYHVMTAMVPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFIS+N+PY MNLRFIAADTLQK++VL +L  WS LS+RG LEWTITLFS+STLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGAR+LI+E FPDTA +I SI VD D++SLDG
Sbjct:    1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLITEQFPDTAANIASIVVDPDVVSLDG 186          
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN1B_ORYSJ (Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.411e-82
Identity = 148/191 (77.49%), Postives = 168/191 (87.96%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEF----SGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDGG 716
            MIT+ D YHV+TA+VPLYVAM LAY SV+WW+IF+PDQCSGINRFVALFAVPLLSFHFIS+N+P+ MNLRF+AADTLQK+IVL +LA+W +LS RG L+W ITLFS+STLPNTLVMGIPLLKGMY       SGSLMVQIVVLQCIIWYTLMLF+FEYRGARLL+ E FPDTA SIVS  VDSD++SL GG
Sbjct:    1 MITVVDLYHVLTAVVPLYVAMTLAYASVRWWRIFSPDQCSGINRFVALFAVPLLSFHFISTNNPFAMNLRFLAADTLQKLIVLALLALWCRLSARGSLDWLITLFSLSTLPNTLVMGIPLLKGMYAAAADVDSGSLMVQIVVLQCIIWYTLMLFLFEYRGARLLVMEQFPDTAASIVSFRVDSDVVSLAGG 191          
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 2.738e-81
Identity = 143/186 (76.88%), Postives = 167/186 (89.78%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713
            MIT  D Y V+TA+VPLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFIS+NDPY MN RF+AADTLQKII+LV+LA+W+ L+K G LEW IT+FS+STLPNTLVMGIPLL  MYG ++GSLMVQ+VVLQCIIWYTL+LF+FEYRGA+LLI E FP+T  SIVS  V+SD++SLDG
Sbjct:    1 MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETGASIVSFKVESDVVSLDG 186          
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 7.967e-81
Identity = 142/186 (76.34%), Postives = 167/186 (89.78%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713
            MIT  D Y V+TA++PLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFISSN+PY MNLRFIAADTLQK+I+L +L IW+  ++ G LEW+IT+FS+STLPNTLVMGIPLL  MYGE+SGSLMVQIVVLQCIIWYTL+LF+FEYRGA++LI E FP+T  SIVS  V+SD++SLDG
Sbjct:    1 MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISSNNPYAMNLRFIAADTLQKLIMLTLLIIWANFTRSGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKILIMEQFPETGASIVSFKVESDVVSLDG 186          
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN2_ARATH (Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 3.954e-80
Identity = 142/186 (76.34%), Postives = 163/186 (87.63%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713
            MIT  D Y V+ AMVPLYVAMILAYGSV+WW IFTPDQCSGINRFVA+FAVPLLSFHFISSNDPY MN  F+AAD+LQK+++L  L +W   S+RG LEW ITLFS+STLPNTLVMGIPLL+ MYG+FSG+LMVQIVVLQ IIWYTLMLF+FE+RGA+LLISE FP+TAGSI S  VDSD++SL+G
Sbjct:    1 MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGSLEWMITLFSLSTLPNTLVMGIPLLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFRGAKLLISEQFPETAGSITSFRVDSDVISLNG 186          
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.744e-80
Identity = 140/186 (75.27%), Postives = 168/186 (90.32%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713
            MI+  D Y V+TA++PLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFIS+N+PY MNLRFIAADTLQKII+L +L +W+  ++ G LEW+IT+FS+STLPNTLVMGIPLL  MYGE+SGSLMVQIVVLQCIIWYTL+LF+FE+RGA++LI E FP+TA SIVS  V+SD++SLDG
Sbjct:    1 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQFPETAASIVSFKVESDVVSLDG 186          
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN3A_ORYSJ (Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.372e-79
Identity = 145/190 (76.32%), Postives = 168/190 (88.42%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKL-SKRGC--LEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDGG 716
            MI+  DFY VM A+VPLYVAM LAYGSV+WW IFTPDQCSGINRFVA+FAVPLLSFHFIS+NDPY MNLRF+AADTLQK++VL  LA WS+L S+ G   L+W+ITLFS+STLPNTLVMGIPLL  MYG +SGSLMVQIVVLQCIIWYTLMLF+FE+R AR+LI++ FPDTA SIVS+HVD D++SL+GG
Sbjct:    1 MISGHDFYTVMAAVVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNLRFLAADTLQKLLVLAGLAAWSRLPSRTGAPRLDWSITLFSLSTLPNTLVMGIPLLIAMYGPYSGSLMVQIVVLQCIIWYTLMLFLFEFRAARMLIADQFPDTAASIVSLHVDPDVVSLEGG 190          
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN2_ORYSJ (Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.114e-74
Identity = 138/195 (70.77%), Postives = 159/195 (81.54%), Query Frame = 3
Query:  156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKR--------GCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAF-PDTAGSIVSIHVDSDIMSLDG 713
            MIT  D Y V+ A+VPLYVAM LAYGSV+WW IFTPDQCSGINRFVA+FAVPLLSFHFIS+NDPY MN RF+AAD+LQK+++L  LA+W  L  R          L+WTITLFS+STLPNTLVMGIPLL+ MYG+FSGSLMVQIVVLQ +IWYTLMLF+FEYRGA+ LISE F PD   SI S  VDSD++SL+G
Sbjct:    1 MITGRDIYDVLAAIVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFISTNDPYSMNYRFLAADSLQKLVILAALAVWHNLLSRYRRNGGAAASLDWTITLFSLSTLPNTLVMGIPLLRAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKALISEQFPPDVGASIASFRVDSDVVSLNG 195          
The following BLAST results are available for this feature:
BLAST of FC921268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PINI_ARATH7.681e-9287.63Auxin efflux carrier component 1 OS=Arabidopsis th... [more]
PIN1C_ORYSJ1.711e-9187.63Probable auxin efflux carrier component 1c OS=Oryz... [more]
PIN1_ORYSJ3.227e-9086.56Auxin efflux carrier component 1 OS=Oryza sativa s... [more]
PIN1B_ORYSJ9.411e-8277.49Probable auxin efflux carrier component 1b OS=Oryz... [more]
PIN4_ARATH2.738e-8176.88Auxin efflux carrier component 4 OS=Arabidopsis th... [more]
PIN7_ARATH7.967e-8176.34Auxin efflux carrier component 7 OS=Arabidopsis th... [more]
PIN2_ARATH3.954e-8076.34Auxin efflux carrier component 2 OS=Arabidopsis th... [more]
PIN3_ARATH6.744e-8075.27Auxin efflux carrier component 3 OS=Arabidopsis th... [more]
PIN3A_ORYSJ4.372e-7976.32Probable auxin efflux carrier component 3a OS=Oryz... [more]
PIN2_ORYSJ1.114e-7470.77Probable auxin efflux carrier component 2 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC32103A10EF RVDevelopN Citrus clementina cDNA clone C32103A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921268 ID=FC921268; Name=FC921268; organism=Citrus clementina; type=EST; length=716bp
GACATGCTGTTCCCTTTGTTTTCCTCTCATCTTCGTTGTCACTTCCACCA
ATATTTCTTCTTCTTCAACCCCCCACCCTTCTCTCTTTCTTGTTTCTTCT
TTGATTGCTAAGTTTTGTTAATTCATTCAATTAGTATCGTTGCAAGTAAC
CAAAGATGATCACACTCGCAGACTTTTACCATGTCATGACTGCAATGGTT
CCACTTTATGTGGCCATGATCTTAGCTTATGGGTCAGTGAAATGGTGGAA
GATTTTCACTCCTGATCAGTGCTCAGGCATCAACCGTTTTGTTGCTCTCT
TTGCAGTCCCCTTGCTCTCTTTCCATTTCATCTCATCCAACGACCCTTAC
AAAATGAACTTGAGGTTCATTGCAGCTGATACTCTTCAAAAAATCATAGT
CCTTGTGGTTCTAGCAATTTGGAGCAAGTTGAGCAAAAGGGGTTGTTTAG
AATGGACCATCACTCTATTTTCAGTATCAACTTTACCAAACACTCTAGTC
ATGGGCATTCCTTTACTCAAAGGAATGTACGGCGAGTTCTCTGGAAGCTT
GATGGTGCAAATAGTTGTTCTTCAATGCATCATTTGGTACACTTTGATGT
TATTCATGTTTGAATATAGAGGTGCCAGGTTGCTTATCTCTGAAGCATTC
CCAGACACTGCTGGCTCTATTGTCTCAATACATGTTGATTCTGACATCAT
GTCACTTGATGGAGGC
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