FC921268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PINI_ARATH (Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1) HSP 1 Score: 336.65 bits (862), Expect = 7.681e-92 Identity = 163/186 (87.63%), Postives = 176/186 (94.62%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713 MIT ADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFI++N+PY MNLRF+AAD+LQK+IVL +L +W KLS+ G L+WTITLFS+STLPNTLVMGIPLLKGMYG FSG LMVQIVVLQCIIWYTLMLF+FEYRGA+LLISE FPDTAGSIVSIHVDSDIMSLDG Sbjct: 1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIAANNPYAMNLRFLAADSLQKVIVLSLLFLWCKLSRNGSLDWTITLFSLSTLPNTLVMGIPLLKGMYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYRGAKLLISEQFPDTAGSIVSIHVDSDIMSLDG 186
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN1C_ORYSJ (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1) HSP 1 Score: 335.495 bits (859), Expect = 1.711e-91 Identity = 163/186 (87.63%), Postives = 177/186 (95.16%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713 MIT ADFYHVMTAMVPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFIS+N+PY MNLRFIAADTLQK+IVL +L +WS LS+RG LEWTITLFS+STLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGAR+LI+E FPDTAG+I SI VD+D++SLDG Sbjct: 1 MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARILITEQFPDTAGAIASIVVDADVVSLDG 186
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN1_ORYSJ (Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 3.227e-90 Identity = 161/186 (86.56%), Postives = 174/186 (93.55%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713 MIT ADFYHVMTAMVPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFIS+N+PY MNLRFIAADTLQK++VL +L WS LS+RG LEWTITLFS+STLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGAR+LI+E FPDTA +I SI VD D++SLDG Sbjct: 1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLITEQFPDTAANIASIVVDPDVVSLDG 186
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN1B_ORYSJ (Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 9.411e-82 Identity = 148/191 (77.49%), Postives = 168/191 (87.96%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEF----SGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDGG 716 MIT+ D YHV+TA+VPLYVAM LAY SV+WW+IF+PDQCSGINRFVALFAVPLLSFHFIS+N+P+ MNLRF+AADTLQK+IVL +LA+W +LS RG L+W ITLFS+STLPNTLVMGIPLLKGMY SGSLMVQIVVLQCIIWYTLMLF+FEYRGARLL+ E FPDTA SIVS VDSD++SL GG Sbjct: 1 MITVVDLYHVLTAVVPLYVAMTLAYASVRWWRIFSPDQCSGINRFVALFAVPLLSFHFISTNNPFAMNLRFLAADTLQKLIVLALLALWCRLSARGSLDWLITLFSLSTLPNTLVMGIPLLKGMYAAAADVDSGSLMVQIVVLQCIIWYTLMLFLFEYRGARLLVMEQFPDTAASIVSFRVDSDVVSLAGG 191
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN4_ARATH (Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1) HSP 1 Score: 301.597 bits (771), Expect = 2.738e-81 Identity = 143/186 (76.88%), Postives = 167/186 (89.78%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713 MIT D Y V+TA+VPLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFIS+NDPY MN RF+AADTLQKII+LV+LA+W+ L+K G LEW IT+FS+STLPNTLVMGIPLL MYG ++GSLMVQ+VVLQCIIWYTL+LF+FEYRGA+LLI E FP+T SIVS V+SD++SLDG Sbjct: 1 MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETGASIVSFKVESDVVSLDG 186
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN7_ARATH (Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2) HSP 1 Score: 300.056 bits (767), Expect = 7.967e-81 Identity = 142/186 (76.34%), Postives = 167/186 (89.78%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713 MIT D Y V+TA++PLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFISSN+PY MNLRFIAADTLQK+I+L +L IW+ ++ G LEW+IT+FS+STLPNTLVMGIPLL MYGE+SGSLMVQIVVLQCIIWYTL+LF+FEYRGA++LI E FP+T SIVS V+SD++SLDG Sbjct: 1 MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISSNNPYAMNLRFIAADTLQKLIMLTLLIIWANFTRSGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKILIMEQFPETGASIVSFKVESDVVSLDG 186
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN2_ARATH (Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2) HSP 1 Score: 297.745 bits (761), Expect = 3.954e-80 Identity = 142/186 (76.34%), Postives = 163/186 (87.63%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713 MIT D Y V+ AMVPLYVAMILAYGSV+WW IFTPDQCSGINRFVA+FAVPLLSFHFISSNDPY MN F+AAD+LQK+++L L +W S+RG LEW ITLFS+STLPNTLVMGIPLL+ MYG+FSG+LMVQIVVLQ IIWYTLMLF+FE+RGA+LLISE FP+TAGSI S VDSD++SL+G Sbjct: 1 MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGSLEWMITLFSLSTLPNTLVMGIPLLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFRGAKLLISEQFPETAGSITSFRVDSDVISLNG 186
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN3_ARATH (Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 6.744e-80 Identity = 140/186 (75.27%), Postives = 168/186 (90.32%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKRGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDG 713 MI+ D Y V+TA++PLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFIS+N+PY MNLRFIAADTLQKII+L +L +W+ ++ G LEW+IT+FS+STLPNTLVMGIPLL MYGE+SGSLMVQIVVLQCIIWYTL+LF+FE+RGA++LI E FP+TA SIVS V+SD++SLDG Sbjct: 1 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQFPETAASIVSFKVESDVVSLDG 186
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN3A_ORYSJ (Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 4.372e-79 Identity = 145/190 (76.32%), Postives = 168/190 (88.42%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKL-SKRGC--LEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAFPDTAGSIVSIHVDSDIMSLDGG 716 MI+ DFY VM A+VPLYVAM LAYGSV+WW IFTPDQCSGINRFVA+FAVPLLSFHFIS+NDPY MNLRF+AADTLQK++VL LA WS+L S+ G L+W+ITLFS+STLPNTLVMGIPLL MYG +SGSLMVQIVVLQCIIWYTLMLF+FE+R AR+LI++ FPDTA SIVS+HVD D++SL+GG Sbjct: 1 MISGHDFYTVMAAVVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNLRFLAADTLQKLLVLAGLAAWSRLPSRTGAPRLDWSITLFSLSTLPNTLVMGIPLLIAMYGPYSGSLMVQIVVLQCIIWYTLMLFLFEFRAARMLIADQFPDTAASIVSLHVDPDVVSLEGG 190
BLAST of FC921268 vs. ExPASy Swiss-Prot
Match: PIN2_ORYSJ (Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.114e-74 Identity = 138/195 (70.77%), Postives = 159/195 (81.54%), Query Frame = 3 Query: 156 MITLADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNDPYKMNLRFIAADTLQKIIVLVVLAIWSKLSKR--------GCLEWTITLFSVSTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEAF-PDTAGSIVSIHVDSDIMSLDG 713 MIT D Y V+ A+VPLYVAM LAYGSV+WW IFTPDQCSGINRFVA+FAVPLLSFHFIS+NDPY MN RF+AAD+LQK+++L LA+W L R L+WTITLFS+STLPNTLVMGIPLL+ MYG+FSGSLMVQIVVLQ +IWYTLMLF+FEYRGA+ LISE F PD SI S VDSD++SL+G Sbjct: 1 MITGRDIYDVLAAIVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFISTNDPYSMNYRFLAADSLQKLVILAALAVWHNLLSRYRRNGGAAASLDWTITLFSLSTLPNTLVMGIPLLRAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKALISEQFPPDVGASIASFRVDSDVVSLNG 195 The following BLAST results are available for this feature:
BLAST of FC921268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921268 ID=FC921268; Name=FC921268; organism=Citrus clementina; type=EST; length=716bpback to top |