FC921269

Overview
NameFC921269
Unique NameFC921269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8917 contig Ccv1_Contig8917:229..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921269 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.326e-87
Identity = 154/220 (70.00%), Postives = 179/220 (81.36%), Query Frame = 2
Query:   35 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIP 694
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+IP
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIP 564          
BLAST of FC921269 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.818e-85
Identity = 146/190 (76.84%), Postives = 166/190 (87.37%), Query Frame = 2
Query:  125 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIP 694
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIP
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIP 561          
BLAST of FC921269 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.374e-85
Identity = 153/202 (75.74%), Postives = 171/202 (84.65%), Query Frame = 2
Query:   92 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIP 694
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNIP
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIP 566          
BLAST of FC921269 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 69/188 (36.70%), Postives = 104/188 (55.32%), Query Frame = 2
Query:  149 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT---GRPNVDWCE--SHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIP 694
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T   G   +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+RMPI+ +  NPR+FITKI  Y ++ +IP
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSIP 186          
The following BLAST results are available for this feature:
BLAST of FC921269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM2_ARATH4.326e-8770.00Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM3_ARATH1.818e-8576.84Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH2.374e-8575.74Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
YL780_MIMIV5.031e-2736.70Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32103A11EF RVDevelopN Citrus clementina cDNA clone C32103A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921269 ID=FC921269; Name=FC921269; organism=Citrus clementina; type=EST; length=714bp
GNAACACATAGATTCCAATCAATAGTACGAAATTCTAACAGATCCAAATT
CAAATCGAAATCCGATCCAGTCTCATCTCTCCTTTGCATTCACTCACCAT
TACCCAATGGGTTTCCCAGCCAACGGCTCCGACGCCGGCTCCAAGCCGCT
CAAGTTTCTCATCTACGGCCGCACTGGCTGGATCGGGGGCTTGCTCGGCA
AGCTCTGCCAAGCTCAGTCCATTGACTTCACCTACGGCTCCGGCCGCCTC
GAGAACCGCGCCTCCCTCGAAGCCGACATCGCCGCCGTCAAGCCCACCCA
CGTCTTCAACGCGGCCGGGGTGACCGGCAGGCCCAACGTCGACTGGTGCG
AATCGCATAAGGTCGAGACCATACGGACTAATGTCGTCGGCACCCTTACG
CTTGCTGACGTCTGCAGAGACAAAGGTTTGATTCTCATTAATTACGCCAC
CGGCTGCATCTTCGAGTACGATTCCGGTCACCCCCTCGGATCCGGCATCG
GCTTCAAGGAGGAGGATACTCCGAATTTTGTCGGATCTTTCTACTCCAAG
ACTAAGGCCATGGTGGAAGAGTTGCTCAAGAATTTTGAGAATGTCTGTAC
TTTGCGTGTCAGGATGCCGATCTCATCAGATTTATCCAATCCTCGCAACT
TCATCACAAAGATCACTCGATATGAAAAGGTAGTCAACATTCCAACTCAA
TGACTATCTTGGAT
back to top