FC921271

Overview
NameFC921271
Unique NameFC921271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14142 contig Ccv1_Contig14142:258..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA1_RAT (Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.009e-16
Identity = 49/148 (33.11%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  151 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAEGGETVFP 582
            I+ P+K +    KPR   +   ++D E + + +LAK +L R+ V D  +G+   +  R S   ++   +D +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP 469          
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA1_MOUSE (Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 47/148 (31.76%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  151 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAEGGETVFP 582
            I+ P+K +    KPR   +   ++D E + + +LAK +L+R+ +++ ++G  +    R S   ++   +D +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP 469          
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA1_PONAB (Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 46/148 (31.08%), Postives = 83/148 (56.08%), Query Frame = 1
Query:  151 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAEGGETVFP 582
            I+ P+K +    KPR   +   ++D E + + +LAK +L+R+ +++ ++G+ +    R S   ++   ++ +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP 469          
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA1_HUMAN (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 46/148 (31.08%), Postives = 83/148 (56.08%), Query Frame = 1
Query:  151 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAEGGETVFP 582
            I+ P+K +    KPR   +   ++D E + + +LAK +L+R+ +++ ++G+ +    R S   ++   ++ +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP 469          
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA1_BOVIN (Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 46/148 (31.08%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  151 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAEGGETVFP 582
            I+ P+K +    KPR   +   ++D E + + +LAK +L+R+ +++ ++G+ +    R S   ++   ++ +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV  GG TVFP
Sbjct:  322 ILAPAKQEDEWDKPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVLAGGATVFP 469          
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA2_CHICK (Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.933e-14
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 1
Query:  151 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVN--IVRGGHRLATVLMYLSDVAEGGETVFPN 585
            +I P K +     P    Y   ++D E + +  LAK +L R+ V D  +G   ++  R S  +++ +  D ++A +  ++   T L  +  E +QV  Y  G +YEPH+D+     +  +   G+RLAT L Y+SDV  GG TVFP+
Sbjct:  324 LIAPFKEEDEWDSPHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNYMSDVEAGGATVFPD 470          
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA1_CHICK (Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.933e-14
Identity = 48/148 (32.43%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  151 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDY----FSDKVNIVRGGHRLATVLMYLSDVAEGGETVFP 582
            I+ P K +    KPR   +   ++D E + +  LAK +L R+ V D  +G+   +  R S   ++   +  +++ I  +I   T L     E++QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV+ GG TVFP
Sbjct:  304 ILGPVKQEDEWDKPRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP 451          
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA2_CAEEL (Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 44/144 (30.56%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  160 PSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAEGGETVF 579
            P KV+ + + P A +++  + D E + +  LA  +LKR+ V ++ +GE + +  R S   ++    D +I  +  +I  +T L +   E++QV  Y  G  Y+PH+D+      +    +  G+R+ATVL Y+S    GG TVF
Sbjct:  315 PIKVEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGNRIATVLFYMSQPERGGATVF 458          
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA1_CAEEL (Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.307e-14
Identity = 48/162 (29.63%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  160 PSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAEGGETVFPNAEEPPRRRTPATNDDL 633
            P KV+   + P A +++  ++D E   +  LAK +L R+ V D+++G+   +  R S   ++ + +  ++  +  +I   T L  E  E++Q+  Y  G  Y+PH+D+     S     +  G+R+ATVL Y+S  + GG TVF  A+       P  ND L
Sbjct:  318 PIKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTGNRIATVLFYMSQPSHGGGTVFTEAKS---TILPTKNDAL 476          
BLAST of FC921271 vs. ExPASy Swiss-Prot
Match: P4HA2_MOUSE (Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  151 IINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYF----SDKVNIVRGGHRLATVLMYLSDVAEGGETVFPN 585
            +I P K +     P    Y   ++D E + +  +AK +L R+ V D  +G   ++  R S  +++ +  D ++A +  ++   T L  +  E +QV  Y  G +YEPH+D+      D    +  G+R+AT L Y+SDV  GG TVFP+
Sbjct:  325 LIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYMSDVEAGGATVFPD 473          
The following BLAST results are available for this feature:
BLAST of FC921271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
P4HA1_RAT6.009e-1633.11Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus nor... [more]
P4HA1_MOUSE1.025e-1531.76Prolyl 4-hydroxylase subunit alpha-1 OS=Mus muscul... [more]
P4HA1_PONAB1.339e-1531.08Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abel... [more]
P4HA1_HUMAN1.339e-1531.08Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie... [more]
P4HA1_BOVIN2.284e-1531.08Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus... [more]
P4HA2_CHICK1.933e-1431.97Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gal... [more]
P4HA1_CHICK1.933e-1432.43Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gal... [more]
P4HA2_CAEEL3.297e-1430.56Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabd... [more]
P4HA1_CAEEL4.307e-1429.63Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabd... [more]
P4HA2_MOUSE5.625e-1430.87Prolyl 4-hydroxylase subunit alpha-2 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC32103B01EF RVDevelopN Citrus clementina cDNA clone C32103B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921271 ID=FC921271; Name=FC921271; organism=Citrus clementina; type=EST; length=663bp
GGAGTTTAACATTTTGTCGGAAAATCTCAAATCCCTCGTCTCTCATAATC
GATCCAATCCACGCTCATGTCTCCCACAAGGCTCTCTCTAAATTTCTTCT
TCCTGCTCTCCTTCTCGTTGTTAATTCGCAAATCTTTCAGCTCTACCGCC
ATTATCAACCCATCTAAAGTCAAACAAATTTCTTGGAAACCCAGGGCCTT
TGTGTACGAGGGTTTTCTCACAGACTTAGAATGCGATCACTTGATTAATC
TTGCAAAATCTCAGCTGAAGAGATCAGCAGTTGCTGATAATTTGAGTGGA
GAGAGCAAGCTGAGCGATGTTCGAACAAGTTCTGGGACCTTTATACCTAA
AGGAAAGGATGCTATTATTGCTGGTATAGAGGACAAGATTGCAACATGGA
CGTTTCTTCCAAAAGAAAATGGGGAAGACATACAAGTACTAAGGTATGAG
CACGGACAGAAATATGAACCACATTATGATTACTTCTCTGACAAGGTTAA
TATTGTTCGGGGCGGACACCGCCTAGCAACTGTGCTAATGTATCTTTCCG
ATGTTGCTGAAGGTGGTGAGACAGTATTTCCCAATGCTGAGGAACCTCCA
CGTCGCAGAACTCCTGCTACCAATGACGATCTTTCTGAATGTGCTAAGAA
AGGAATTGCAGTG
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