FC921273

Overview
NameFC921273
Unique NameFC921273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921273_ssr540 microsatellite FC921273_ssr540:540..551. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921273 vs. ExPASy Swiss-Prot
Match: PP434_ARATH (Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.377e-25
Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = 2 
Query:   14 FLGFSVLVKGLCTKGRIEEARSILREMLQSKSVLELINRVDIEV-ESESVLNFLISLCEQGSILEAIAILDEIGYMLFPT-QRFGTDRAIETQNKLDECE 307
            F GF  L+KG CTKGR+EEAR +LREML S+SV++LINRVD E+ ESES+  FL+ LCEQG + +AI ILDEI   ++P+ +  G+ + ++  N ++E E
Sbjct:  830 FFGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKLINRVDAELAESESIRGFLVELCEQGRVPQAIKILDEISSTIYPSGKNLGSYQRLQFLNDVNEEE 929

HSP 2 Score: 33.8834 bits (76), Expect = 6.377e-25
Identity = 13/31 (41.94%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:  412 HDFNFCYSKVASFCSKGELQKANKLMKEMLS 504
            HDF+  +S V+S C+ G+L++AN+ +  +LS
Sbjct:  937 HDFHSLHSTVSSLCTSGKLEQANEFVMSVLS 967
The following BLAST results are available for this feature:
BLAST of FC921273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP434_ARATH6.377e-2553.00Pentatricopeptide repeat-containing protein At5g57... [more]
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Properties
Property NameValue
Genbank descriptionC32103B03EF RVDevelopN Citrus clementina cDNA clone C32103B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921273 ID=FC921273; Name=FC921273; organism=Citrus clementina; type=EST; length=669bp
GTGTATCACCTGATTTCTTGGGTTTTCTGTATTGGTTAAAGGTCTTTGTA
CGAAGGGAAGGATTGAAGAGGCTAGAAGCATCTTAAGAGAAATGCTGCAG
TCAAAATCTGTTCTTGAACTGATAAACAGAGTTGATATCGAAGTTGAATC
AGAGTCAGTTTTAAACTTTCTTATCTCTTTATGTGAGCAAGGAAGTATAC
TAGAAGCTATTGCTATCCTTGATGAAATTGGATACATGCTTTTCCCTACT
CAGAGATTTGGCACCGATCGTGCAATAGAAACTCAAAACAAGCTTGATGA
ATGTGAATCTCTCAATGCAGTTGCCTCAGTAGCTTCACTTTCCAATCAAC
AAACTGATTCAGATGTGTTGGGGAGGTCCAACTACCATAATGTGGAAAAA
TATCTAAATTTCATGACTTTAACTTTTGTTACTCCAAAGTTGCGTCATTC
TGTTCAAAGGGAGAGCTGCAGAAGGCAAATAAGTTAATGAAGGAAATGCT
TTCTAGTTTCAAAGAAGATTCCTAGATGCAAATTTATTGGCTGCTGCTGC
TACACGGGCTTCCTATTCCTTGCGTAGTGGAAAAGAATCTAATTGCTTAT
ATCCTGATGTCTTACCTGGGATCATTTGCTGTAGTATGAGGCTCTTCCTG
TTCCTGGCTGCTATAAGTA
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