FC921274

Overview
NameFC921274
Unique NameFC921274
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14282 contig Ccv1_Contig14282:1..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 412.149 bits (1058), Expect = 1.497e-114
Identity = 191/201 (95.02%), Postives = 198/201 (98.51%), Query Frame = 1 
Query:  115 MDTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            MDTGGNSL SG DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQ+MQVLKPFPAR+RDLCRFHADDYVSFLRSITPETQQDQ+RQLKRFNVGEDCPVFDGL+SFCQTYAGGSVGG+VKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGV++AFY TDRV
Sbjct:    1 MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRV 201
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 5.167e-99
Identity = 168/200 (84.00%), Postives = 185/200 (92.50%), Query Frame = 1 
Query:  121 TGGNSLPS-GTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            +GGNSLPS G DG KR+VCYFYDP+VGNYYYGQGHPMKPHRIRMTH+LLA YGLL  MQV +P PARER+LCRFHA++Y++FLRS+TPETQQDQ+R LKRFNVGE+CPV DGL+SFCQTYAG SVGGAVK NHG  DIAINW+GGLHHAKKCEASGFCYVNDIVLAILELLK HERVLYVDIDIHHGDGV++AFYTTDRV
Sbjct:    8 SGGNSLPSVGPDGQKRRVCYFYDPDVGNYYYGQGHPMKPHRIRMTHSLLARYGLLNQMQVYRPNPARERELCRFHAEEYINFLRSVTPETQQDQIRLLKRFNVGEECPVLDGLYSFCQTYAGASVGGAVKFNHG-HDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHHERVLYVDIDIHHGDGVEEAFYTTDRV 206
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDAC1_CHICK (Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.859e-81
Identity = 135/190 (71.05%), Postives = 158/190 (83.16%), Query Frame = 1 
Query:  148 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ  AGGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGV++AFYTTDRV
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRV 193
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.414e-80
Identity = 134/190 (70.53%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:  148 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGV++AFYTTDRV
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRV 193
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.414e-80
Identity = 134/190 (70.53%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:  148 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGV++AFYTTDRV
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRV 193
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.414e-80
Identity = 134/190 (70.53%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:  148 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            T G KRKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGV++AFYTTDRV
Sbjct:    4 TQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRV 193
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.149e-80
Identity = 133/190 (70.00%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:  148 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            T G +RKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGV++AFYTTDRV
Sbjct:    4 TQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRV 193
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.149e-80
Identity = 133/190 (70.00%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:  148 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            T G +RKVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DIA+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGV++AFYTTDRV
Sbjct:    4 TQGTRRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRV 193
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.197e-79
Identity = 132/190 (69.47%), Postives = 158/190 (83.16%), Query Frame = 1 
Query:  148 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            T G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   D+ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ  AGGSV  AVKLN    DI++NW+GGLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGV++AFYTTDRV
Sbjct:    4 TLGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRV 193
[Close]
BLAST of FC921274 vs. ExPASy Swiss-Prot
Match: HDAC2_MOUSE (Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.548e-79
Identity = 130/188 (69.15%), Postives = 157/188 (83.51%), Query Frame = 1 
Query:  154 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVKKAFYTTDRV 717
            G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGV++AFYTTDRV
Sbjct:    7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRV 194
The following BLAST results are available for this feature:
BLAST of FC921274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HDA19_ARATH1.497e-11495.02Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDA19_MAIZE5.167e-9984.00Probable histone deacetylase 19 OS=Zea mays PE=2 S... [more]
HDAC1_CHICK4.859e-8171.05Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE... [more]
HDAC1_RAT1.414e-8070.53Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_MOUSE1.414e-8070.53Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_BOVIN1.414e-8070.53Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 ... [more]
HDAC1_PONAB3.149e-8070.00Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]
HDAC1_HUMAN3.149e-8070.00Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
HDA1A_XENLA1.197e-7969.47Probable histone deacetylase 1-A OS=Xenopus laevis... [more]
HDAC2_MOUSE4.548e-7969.15Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32103B04EF RVDevelopN Citrus clementina cDNA clone C32103B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921274 ID=FC921274; Name=FC921274; organism=Citrus clementina; type=EST; length=731bp
CTGCATTACGCAAGTTCAGCCCCGTCTTTTTATTCTCTTGAGGTCTCGTC
CCGTTGCATTCTTAGTTAGTGTTGGCTCTCCCAGTAAGTGCCGGCCCCAA
GAAATATTATTCATATGGACACTGGAGGCAATTCTTTACCATCTGGTACT
GATGGCGTTAAGAGAAAGGTGTGTTATTTCTACGACCCAGAGGTGGGCAA
TTACTACTATGGACAGGGTCACCCAATGAAACCCCATCGCATTCGTATGA
CCCATGCCCTTCTCGCCCACTACGGCTTGCTTCAGAACATGCAGGTCCTC
AAACCTTTTCCTGCTAGGGAAAGGGATCTTTGCCGCTTCCATGCCGATGA
TTATGTCTCCTTCCTCAGGAGTATCACCCCTGAGACTCAGCAGGATCAGC
TTAGGCAGCTCAAGCGCTTTAATGTTGGTGAAGATTGCCCTGTCTTTGAC
GGTCTTTTCTCCTTCTGTCAAACTTATGCTGGGGGCTCTGTTGGTGGTGC
TGTCAAGTTGAATCACGGCCTCTGTGATATTGCTATCAACTGGGCCGGTG
GCCTTCATCATGCTAAGAAATGTGAAGCTTCCGGATTCTGTTATGTCAAT
GACATTGTCTTGGCCATTTTGGAGCTACTTAAGCAGCATGAGCGTGTATT
ATATGTAGATATTGATATCCATCATGGAGATGGCGTGAAGAAAGCATTTT
ATACAACTGATAGGGTAAATGACTGTTCATT
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