FC921275

Overview
NameFC921275
Unique NameFC921275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14283 contig Ccv1_Contig14283:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_SOYBN (Magnesium-chelatase subunit chlI, chloroplastic OS=Glycine max GN=CHLI PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.042e-75
Identity = 152/202 (75.25%), Postives = 163/202 (80.69%), Query Frame = 3
Query:  102 MASVLGTRSSSAILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALFAVTNVATEVNSVEQAQK-RSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            MAS LGT SS A+L SR                    GQNYGR+FYGGIGI    GRA  +VTNVATEVNSVEQAQ   SKESQRPVYPF+AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP IKVV GDPYNSDP+DPE MG+EVRE V++GEELS+  +KINMVDLPLGATEDRVCGTIDIEKAL
Sbjct:    1 MASALGT-SSIAVLPSR--YFSSSSSKPSIHTLSLTSGQNYGRKFYGGIGIHGIKGRAQLSVTNVATEVNSVEQAQSIASKESQRPVYPFSAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVVAGDPYNSDPQDPEFMGVEVRERVLQGEELSVVLTKINMVDLPLGATEDRVCGTIDIEKAL 199          
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_TOBAC (Magnesium-chelatase subunit chlI, chloroplastic OS=Nicotiana tabacum GN=CHLI PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.230e-64
Identity = 134/206 (65.05%), Postives = 158/206 (76.70%), Query Frame = 3
Query:  102 MASVLGTRSSSA--ILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALF--AVTNVATEVNSVE-QAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            MAS+LGT SS+A  ILAS PL                  GQ+ GR+FYGGI +  K GR+ F  A++NVATE+N ++ + +   +ESQRPVYPF AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP IKV+ GDP+NSDP+D E M  EVR+ +  G++L I+ +KINMVDLPLGATEDRVCGTIDIEKAL
Sbjct:    1 MASLLGTSSSAAAAILASTPLSSRSCKPAVFSLFPSS--GQSQGRKFYGGIRVPVKKGRSQFHVAISNVATEINLLKNRVRNLLEESQRPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEIKVISGDPFNSDPDDQEVMSAEVRDKLRSGQQLPISRTKINMVDLPLGATEDRVCGTIDIEKAL 204          
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_ARATH (Magnesium-chelatase subunit chlI, chloroplastic OS=Arabidopsis thaliana GN=CHLI PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.393e-62
Identity = 135/205 (65.85%), Postives = 151/205 (73.66%), Query Frame = 3
Query:  102 MASVLGTRSSSAILASRPLXXXXXXXXXXXXXXXXXXGQNYGRRFYGGIGIEEKMGRALF--AVTNVATEVNSVEQAQKR--SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            MAS+LGT SSSAI AS  L                  G+ +G +   GI I  K  R+ +  +V NVATE+NS EQ   +  SK+S RPVYPF AIVGQ+EMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLP I VV GDPYNSDP DPE MG+EVRE V KGE++ +  +KINMVDLPLGATEDRVCGTIDIEKAL
Sbjct:    1 MASLLGT-SSSAIWASPSLSSPSSKPSSSPICFRP--GKLFGSKLNAGIQIRPKKNRSRYHVSVMNVATEINSTEQVVGKFDSKKSARPVYPFAAIVGQDEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPEINVVAGDPYNSDPIDPEFMGVEVRERVEKGEQVPVIATKINMVDLPLGATEDRVCGTIDIEKAL 202          
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_CHLRE (Magnesium-chelatase subunit chlI, chloroplastic OS=Chlamydomonas reinhardtii GN=CHLI PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.962e-48
Identity = 96/144 (66.67%), Postives = 110/144 (76.39%), Query Frame = 3
Query:  273 ALFAVTNVATEVNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            AL      ATEV + E    +     RP++PFTAIVGQ+EMKL L+LNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP ++VV  DP+NSDP DPE M  EVR  V  GE+L ++  KI MVDLPLGATEDRVCGTIDIEKAL
Sbjct:   50 ALLVRAAAATEVKAAEGRTGKELGQARPIFPFTAIVGQDEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEMQVVANDPFNSDPTDPELMSEEVRNRVKAGEQLPVSSKKIPMVDLPLGATEDRVCGTIDIEKAL 193          
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_NEPOL (Magnesium-chelatase subunit chlI OS=Nephroselmis olivacea GN=chlI PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.608e-47
Identity = 96/123 (78.05%), Postives = 104/123 (84.55%), Query Frame = 3
Query:  336 SKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            + E  RPV+PFTAIVGQEEMKL LLLNVIDPKIGGVMIMGDRGTGKSTTVR+LVDLLP I+VV  DP+NS P DPE M  EVRE V +GE +  T +KI MVDLPLGATEDRVCGTIDIEKAL
Sbjct:    7 TSEQARPVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPEIEVVENDPFNSHPYDPELMSDEVREKVHRGESIRTTTTKIPMVDLPLGATEDRVCGTIDIEKAL 129          
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_CHLVU (Magnesium-chelatase subunit chlI OS=Chlorella vulgaris GN=chlI PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.448e-47
Identity = 95/125 (76.00%), Postives = 106/125 (84.80%), Query Frame = 3
Query:  330 KRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            + S E  RPV+PFTAIVGQEEMKL L+LNVIDPKIGGVMIMGDRGTGKSTTVR+LVDLLP I+VV  DP+NSDP+DPE M  EVR  + + E + IT  KI+MVDLPLGATEDRVCGTIDIEKAL
Sbjct:    6 ENSLEQARPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTVRALVDLLPEIQVVADDPFNSDPKDPELMSQEVRGRLQRKETVPITTKKISMVDLPLGATEDRVCGTIDIEKAL 130          
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_MESVI (Magnesium-chelatase subunit chlI OS=Mesostigma viride GN=chlI PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.388e-46
Identity = 89/133 (66.92%), Postives = 109/133 (81.95%), Query Frame = 3
Query:  306 VNSVEQAQKRSKESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            +++++  +  +K  +RPVYPFTAIVGQEEMKL L+LNVIDP IGGVMIMGDRGTGKSTT+R+LVDLLP I+VV  DP+NSDP DP+ M  EVRE +   +E+    +KI +VDLPLGATEDRVCGTIDIE+AL
Sbjct:    1 MSTIDLIKNVTKREERPVYPFTAIVGQEEMKLALILNVIDPDIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVTNDPFNSDPRDPDLMSDEVREKINNKQEVPTIKTKIKIVDLPLGATEDRVCGTIDIERAL 133          
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_ANASP (Magnesium-chelatase subunit chlI OS=Anabaena sp. (strain PCC 7120) GN=chlI PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.441e-45
Identity = 90/120 (75.00%), Postives = 100/120 (83.33%), Query Frame = 3
Query:  345 SQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            ++R V+PFTAIVGQEEMKL LLLNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP I VV  DP+NSDP DP+ M  EVR+    G E+ I F K+ MVDLPLGATEDRVCGTIDIEKAL
Sbjct:   11 ARRVVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEIPVVANDPFNSDPSDPDLMSDEVRQKSGTGAEIPIEFKKVQMVDLPLGATEDRVCGTIDIEKAL 130          
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_SYNY3 (Magnesium-chelatase subunit chlI OS=Synechocystis sp. (strain PCC 6803) GN=chlI PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44
Identity = 90/121 (74.38%), Postives = 100/121 (82.64%), Query Frame = 3
Query:  342 ESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            +++R V+PFTAIVGQ+EMKL LLLNVIDPKIGGVMIMGDRGTGKSTT+R+L DLLP I+VV  DP+NS P DPE M  EVR  V   E LSI   K+ MVDLPLGATEDRVCGTIDIEKAL
Sbjct:   10 KTRRVVFPFTAIVGQDEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRALADLLPEIEVVANDPFNSSPSDPEMMSEEVRIRVDSQEPLSIVKKKVTMVDLPLGATEDRVCGTIDIEKAL 130          
BLAST of FC921275 vs. ExPASy Swiss-Prot
Match: CHLI_CYAPA (Magnesium-chelatase subunit chlI OS=Cyanophora paradoxa GN=chlI PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.025e-43
Identity = 85/122 (69.67%), Postives = 99/122 (81.15%), Query Frame = 3
Query:  339 KESQRPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKAL 704
            K + RP++PFTAIVGQEEMKL LLLN++DPKIGGVMIMGDRGTGKSTT+R+L DLLP I +V  DP+NS P D E M   VR+    GEE+S+   K+ M+DLPLGATEDRVCGTIDIEKAL
Sbjct:    2 KNNNRPIFPFTAIVGQEEMKLALLLNIVDPKIGGVMIMGDRGTGKSTTIRALADLLPEIDIVANDPFNSHPTDIELMSDNVRQLKENGEEISLIQKKVPMIDLPLGATEDRVCGTIDIEKAL 123          
The following BLAST results are available for this feature:
BLAST of FC921275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CHLI_SOYBN5.042e-7575.25Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_TOBAC5.230e-6465.05Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_ARATH6.393e-6265.85Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_CHLRE8.962e-4866.67Magnesium-chelatase subunit chlI, chloroplastic OS... [more]
CHLI_NEPOL2.608e-4778.05Magnesium-chelatase subunit chlI OS=Nephroselmis o... [more]
CHLI_CHLVU4.448e-4776.00Magnesium-chelatase subunit chlI OS=Chlorella vulg... [more]
CHLI_MESVI8.388e-4666.92Magnesium-chelatase subunit chlI OS=Mesostigma vir... [more]
CHLI_ANASP2.441e-4575.00Magnesium-chelatase subunit chlI OS=Anabaena sp. (... [more]
CHLI_SYNY34.603e-4474.38Magnesium-chelatase subunit chlI OS=Synechocystis ... [more]
CHLI_CYAPA1.025e-4369.67Magnesium-chelatase subunit chlI OS=Cyanophora par... [more]

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Properties
Property NameValue
Genbank descriptionC32103B05EF RVDevelopN Citrus clementina cDNA clone C32103B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921275 ID=FC921275; Name=FC921275; organism=Citrus clementina; type=EST; length=720bp
GACACCAATAAGAAACCATGTCAATCTGTGGTGGTCAACAAAACCAGTGA
ACACAAACTCTCTCACCCTAGTAACAGTAACACTTACATTTGCGCACGGG
CATGGCGTCCGTGTTAGGAACTCGTTCTTCCTCTGCAATCTTGGCTTCTC
GCCCTCTCTCTTTTCCAGCATCAAACTCAAAGTCTGCCATCTCCTCTCTC
TCCTTAAACCCCGGGCAGAATTATGGAAGGAGGTTTTATGGGGGGATTGG
GATTGAAGAAAAGATGGGACGGGCTCTGTTTGCAGTTACCAATGTTGCCA
CTGAGGTTAACTCTGTTGAGCAGGCCCAGAAGAGATCCAAGGAAAGCCAG
AGGCCGGTGTATCCATTTACTGCAATAGTGGGACAGGAAGAGATGAAATT
GTGCCTTTTGTTAAATGTGATTGATCCCAAAATTGGTGGTGTTATGATTA
TGGGTGATAGAGGAACGGGGAAATCCACCACTGTTAGGTCCTTGGTAGAT
TTACTCCCCGTAATCAAGGTAGTTGTCGGTGACCCATATAACTCAGATCC
AGAAGATCCAGAGGCCATGGGTATTGAAGTCAGAGAGTCTGTCGTGAAAG
GGGAGGAGCTCTCCATTACATTCAGTAAAATCAACATGGTTGATTTGCCA
TTGGGTGCTACAGAAGACAGGGTCTGTGGGACGATTGACATTGAGAAAGC
TCTACGAGGGTGTCAAGCAT
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