FC921278

Overview
NameFC921278
Unique NameFC921278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9858 contig Ccv1_Contig9858:9..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 2.729e-65
Identity = 113/181 (62.43%), Postives = 134/181 (74.03%), Query Frame = 1
Query:  166 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPS 702
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT  ETTGGW  AP G Y+WGYC+ +Q   PASDYC      PC    +YYGRGP+QL+WN NY  CG A+GVDLLNNPDL+A D V+ FK+AIWFWMTAQPPKPSC  VI  +W PS
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPS 263          
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.354e-64
Identity = 111/181 (61.33%), Postives = 134/181 (74.03%), Query Frame = 1
Query:  166 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPS 702
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT  ETTGGW  AP G Y+WGYC+ +Q   P+S+YC      PC     YYGRGP+QL+WN NY +CG A+G DLLNNPDL++ DPV+ FK+AIWFWMT Q PKPSC  VI+ +W PS
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCF-KQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPS 248          
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.769e-64
Identity = 114/183 (62.30%), Postives = 136/183 (74.32%), Query Frame = 1
Query:  163 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPSA 705
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+ FKSA+WFWMT Q PKPSC +VII  W PSA
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSA 258          
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.310e-64
Identity = 119/202 (58.91%), Postives = 143/202 (70.79%), Query Frame = 1
Query:  112 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPSA 705
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+ FKSA+WFWMT Q PKPSC +VII  W PS+
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP-GDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSS 253          
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.146e-64
Identity = 119/196 (60.71%), Postives = 142/196 (72.45%), Query Frame = 1
Query:  130 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGG--WPDAPGGEYAWGYCYIRQVSRPASDYCY---RYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPS 702
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT  ETTGG  W  AP G Y WGYCY R+++   +DYC     Y PC    QY+GRGP+QLTWN NY +CG A+GVDLLNNPDLLATDP + FKSA WFWMT Q PKPSC +VII  W+PS
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN--PADYCQWDPNY-PCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPS 249          
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.146e-63
Identity = 116/200 (58.00%), Postives = 139/200 (69.50%), Query Frame = 1
Query:  112 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPSA 705
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT  ETTGGW  AP G YAWGYC++R+  R  S YC      PC    QYYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+ FKSA+WFWMTAQ PKPS  +VI   W PS+
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE--RNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSS 253          
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.497e-63
Identity = 113/200 (56.50%), Postives = 140/200 (70.00%), Query Frame = 1
Query:  112 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPS 702
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT  ETTGGW  AP G YAWGYCY+R+   P + YC      PC    +YYGRGPIQ+++N NY + G+A+GVDL+NNPDL+ATD V+ FK+A WFWMT Q PKPSC  VI   W PS
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGA-YCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPS 242          
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.956e-63
Identity = 116/201 (57.71%), Postives = 140/201 (69.65%), Query Frame = 1
Query:  112 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPSA 705
            C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+ FKSAIWFWMT Q PKPSC +VII  W PSA
Sbjct:   58 CPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPG-DYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSA 257          
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.554e-63
Identity = 116/203 (57.14%), Postives = 142/203 (69.95%), Query Frame = 1
Query:  112 CGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPSA 705
            CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+ FK+A+WFWMT Q PKPSC +VII  WNPS+
Sbjct:   57 CGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNP-GDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSS 257          
BLAST of FC921278 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.356e-63
Identity = 117/205 (57.07%), Postives = 140/205 (68.29%), Query Frame = 1
Query:  112 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLPFKSAIWFWMTAQPPKPSCREVIIDEWNPSA 705
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT  ETTGGW  AP G YAWGYC++R+  R  S YC      PC    QYYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+ FKSA+WFWMTAQ PKPS  +VI   W PS+
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE--RNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSS 252          
The following BLAST results are available for this feature:
BLAST of FC921278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_ARATH2.729e-6562.43Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_BRANA1.354e-6461.33Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI1_TOBAC1.769e-6462.30Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_TOBAC2.310e-6458.91Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_THECC5.146e-6460.71Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_PHAVU1.146e-6358.00Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_VITVI1.497e-6356.50Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI4_SOLTU1.956e-6357.71Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU2.554e-6357.14Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI5_PHAVU4.356e-6357.07Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32103B08EF RVDevelopN Citrus clementina cDNA clone C32103B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921278 ID=FC921278; Name=FC921278; organism=Citrus clementina; type=EST; length=711bp
CAAGTAAAGGATAATTGATATCATAACTCTTGCTTTCAAATGAGGCTCAT
TGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTT
CAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGC
CACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTT
TGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCT
TCTACACTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTT
GGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTT
TGCCCAAACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACCTGGTG
GAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCGCCCTGCG
TCCGACTACTGTTATCGTTACTGTCCATGTCCTTTGCCAGGGCAATACTA
TGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCG
GAGAAGCCTTGGGGGTGGACTTGCTGAACAATCCAGACCTTCTTGCCACT
GATCCAGTACTACCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACA
GCCACCAAAGCCATCGTGCCGCGAAGTCATTATCGACGAATGGAACCCAT
CAGCATTGAGT
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