FC921281

Overview
NameFC921281
Unique NameFC921281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13855 contig Ccv1_Contig13855:116..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921281 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.763e-30
Identity = 68/141 (48.23%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  278 PLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFV 700
            P+ S        RA   G  +    N+ +N  +   T M    PGCDY HWLIVM+ P     T++QMID Y+ TLA V+GS EEAKK +Y  S   Y GF C + EETS K +GLPGVL+VLPDSY+D +NKDYG + +V
Sbjct:   42 PIKSRSAAYPTVRALTDGEYSSRRNNNNNNSGEERETIM---LPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYV 179          
BLAST of FC921281 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.266e-29
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 2
Query:  326 SGNSAYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFV 700
            S  +  S LN  + N+S+RPP E   L  GCD+EHWL+V++ P GE  T+ ++ID YIKTLAQ+VGSE+EA+ KIY+VS   Y+ FG  + E+ S+KL+ L  V +VLPDSY+D  NKDYG E F+
Sbjct:   66 STQATSSSLNDPNPNWSNRPPKETI-LLDGCDFEHWLVVVEPPQGE-PTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFI 189          
The following BLAST results are available for this feature:
BLAST of FC921281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DAG_ANTMA4.763e-3048.23DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
UMP1_ARATH5.266e-2952.38Uncharacterized protein At3g15000, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionC32103B11EF RVDevelopN Citrus clementina cDNA clone C32103B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921281 ID=FC921281; Name=FC921281; organism=Citrus clementina; type=EST; length=702bp
GGCTATCTTCATTTCTTATTTCAAAAACCCTCGTTTCTTTCTTCTATCAT
CTTCTTCTTCGATCTCCCATAAATCCTCGTCAGAAAAAACAATGGCTCAA
ACCCTAACACGGGCCATTACGGCTCTCTCCATCCGCAGCTCAAGACTGTC
CCTCTTCAGCTCAAAGCGCCTGCTTTCCACAAACACCACTACCGTCACCG
CCCCATCTCCGCTCCCCTCTCTGCTCTTCAGCCGTCGGGCCGCAGCCCCG
CTCTCCCATGCGGTGGGGTTGATTTCCCCCCTACCATCCACTCGCTTCTG
CCAAATACGGTGCCGTGCCAACCGCTCTGGAAACTCAGCCTACTCCCCGC
TCAACTCCGGGTCCAACTTCAGCGACCGCCCTCCCACCGAGATGGCTCCG
CTATTCCCCGGCTGTGACTACGAGCACTGGCTTATCGTCATGGACAAGCC
CGGCGGCGAGGGCGCCACTAAACAGCAGATGATTGATTGTTATATCAAAA
CCCTTGCTCAGGTGGTCGGCAGTGAGGAAGAGGCAAAGAAGAAAATTTAC
AATGTTTCGTGTGAGAGGTATTTTGGATTCGGCTGTGAGCTTGATGAGGA
GACCTCTAATAAGCTAGAAGGCTTGCCGGGTGTTTTGTTTGTGCTTCCAG
ATTCATATGTTGATCCTGAAAACAAAGACTATGGTGCTGAGTTGTTTGTG
AA
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