FC921283

Overview
NameFC921283
Unique NameFC921283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14629 contig Ccv1_Contig14629:99..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921283 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 62/169 (36.69%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  213 SKDVTINKSNDLSVRIFLPRQALDSSSSTNKIK------LPVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYAD-LTSCFLMGTSAGGNIVYYAGLRAAAEAEYMLPLKIKGLILHSPFFGGLNXTE 698
            S DV I++  +L  R++ P  A  S S T+         +PVIV+FHGG F   S  +++    C  +     AVVVSV+YR APE+R P A+DD    L W+      W+ +  D     FL G S+GGNIV+   +RA         + + G IL +P FGG   TE
Sbjct:   65 SFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWV--NSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESR-----IDVLGNILLNPMFGGTERTE 226          
BLAST of FC921283 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 58/168 (34.52%), Postives = 88/168 (52.38%), Query Frame = 3
Query:  228 INKSNDLSVRIFLPRQALDSSS----------STNKIKLPVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYADL-TSCFLMGTSAGGNIVYYAGLRAAAEAEYMLPLKIKGLILHSPFFGGLNXTE 698
            ++ + +L  RI+ P   L  +           ST +I +PV+++FHGG F   S  +++   FC  + +    VVVSVDYR +PEHR P A+DD   AL+W+ +    W+ +  D     +L G S+GGNI +   +RA  E      +K+ G IL  P FGG   T+
Sbjct:   69 VDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEI-VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSR--VWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEG-----VKVLGNILLHPMFGGQERTQ 228          
BLAST of FC921283 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  315 PVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYADLTS-CFLMGTSAGGNIVYYAGLRAAAEAEYMLPLKIKGLILHSPFFGGLNXTE 698
            PVI++FHGG F+  S  +++    C         VVVSV+YR APEHR P A+DD   AL W+++    ++ +  D  +  FL G S+GGNI ++  +RAA E      +K+ G IL +  FGG   TE
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS--QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEG-----VKVCGNILLNAMFGGTERTE 235          
BLAST of FC921283 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 63/186 (33.87%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  168 VAATLDPDDHQTIAVSKDVTINKSNDLSVRIFLPRQA--------LDSSSSTNKIKLPVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYAD-LTSCFLMGTSAGGNIVYYAGLRAAAEAEYMLPLKIKGLILHSPFFGGLNXTE 698
            V A  +P D      S DV I++  +L  R++ P  A        LD     +   +PVI++FHGG F   S  +++    C  +      VVVSV+YR APE+  P A+DD   AL+W+      W+ +  D     FL G S+GGNI +   LRA         + + G IL +P FGG   TE
Sbjct:   53 VTANANPVDG---VFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV--NSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESG-----IDVLGNILLNPMFGGNERTE 228          
BLAST of FC921283 vs. ExPASy Swiss-Prot
Match: ADCL2_HUMAN (Arylacetamide deacetylase-like 2 OS=Homo sapiens GN=AADACL2 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 48/154 (31.17%), Postives = 80/154 (51.95%), Query Frame = 3
Query:  243 DLSVRIFLPRQALDSSSSTNKIKLPVIVYFHGGGFILFSVGTSMTHDFCSN-IASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNY-ADLTSCFLMGTSAGGNIVYYAGLRAAAEAEYMLPLKIKGLILHSPFFGGLNXTE 698
            D+ VR++LP++  ++       +   ++YFHGGGF  F        DF +   A+   AVVV VDYRLAP+H  PA  +D + A+ + +   ++ +T Y  D T   + G S+GGN+      +   +AE    +K++ L+     + GL  T+
Sbjct:   88 DIPVRLYLPKRKSET-------RRRAVIYFHGGGFC-FGSSKQRAFDFLNRWTANTLDAVVVGVDYRLAPQHHFPAQFEDGLAAVKFFLL--EKILTKYGVDPTRICIAGDSSGGNLATAVTQQVQNDAEIKHKIKMQVLL-----YPGLQITD 226          
The following BLAST results are available for this feature:
BLAST of FC921283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L3_ARATH1.289e-1936.69Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH8.357e-1934.52Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ5.417e-1839.53Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH2.688e-1733.87Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
ADCL2_HUMAN3.401e-1231.17Arylacetamide deacetylase-like 2 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionC32103C01EF RVDevelopN Citrus clementina cDNA clone C32103C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921283 ID=FC921283; Name=FC921283; organism=Citrus clementina; type=EST; length=699bp
CGCCCATCAAGTTTCAGTTTCATTACATTCACAGAGCAAACCCTAATATG
TCAGATAAGTTTGCCCTCCCACATTCCATTGATCCCTATCTATACCTTCA
GATCACCCCTAACGATGATGACACCCTCACTCGCAACTACAGCAATCTCC
CAAGTAGCCTACAAATGGTAGCCGCTACACTTGATCCTGATGATCACCAA
ACAATAGCTGTCTCCAAAGATGTTACCATCAATAAATCAAACGACCTTTC
TGTCCGCATATTCCTGCCCCGTCAAGCACTTGATTCTTCCTCTTCCACCA
ATAAAATTAAGCTACCTGTCATCGTTTACTTTCACGGTGGAGGGTTCATT
CTCTTCAGCGTTGGCACAAGCATGACTCACGATTTCTGCTCAAACATAGC
ATCCGAATTCCCTGCTGTAGTTGTATCAGTTGACTACAGGCTAGCCCCCG
AGCATCGTCTCCCGGCGGCTCATGATGATGCCATGGAAGCCTTGCACTGG
ATCATAACCACCCATGATGAGTGGATAACGAACTATGCTGACTTAACTTC
ATGTTTCTTAATGGGCACTAGTGCTGGCGGTAACATAGTTTATTATGCAG
GGCTACGTGCAGCTGCAGAAGCTGAATATATGTTACCATTGAAGATCAAA
GGGCTGATATTGCATTCACCTTTCTTTGGTGGGCTCAATANGACTGAGT
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