FC921287

Overview
NameFC921287
Unique NameFC921287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14284 contig Ccv1_Contig14284:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921287 vs. ExPASy Swiss-Prot
Match: PEX10_ARATH (Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.509e-52
Identity = 112/162 (69.14%), Postives = 124/162 (76.54%), Query Frame = 1
Query:  223 QREMGS----GETRRFPPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERISSRVASRGIALAESQSDEFDRYNAAGSSRDQSLETIESPS 696
            Q E GS    G  RRFP AAQPEIMRAAEKD+QYASFI++ACRDAFR LFGTR+A+AYQ E KL+GQMLYYVLTTGSGQQTLGEEYCDI QV GP  L PTPARRALFI+YQTAVPYIAERIS+R A++ +   E  SDEF      G S   S   I+ PS
Sbjct:   11 QDEPGSSGFHGGIRRFPLAAQPEIMRAAEKDDQYASFIHEACRDAFRHLFGTRIALAYQKEMKLLGQMLYYVLTTGSGQQTLGEEYCDIIQVAGPYGLSPTPARRALFILYQTAVPYIAERISTRAATQAVTFDE--SDEF-----FGDSHIHSPRMIDLPS 165          
BLAST of FC921287 vs. ExPASy Swiss-Prot
Match: PEX10_DICDI (Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum GN=pex10 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  211 NATHQREMGSGETRRFPPAA-QPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQ-RLPPTPARRALFIVYQTAVPYIAERISSRVASR 597
            N  +   +    +  +P  A QP+I+R+++KDE Y     D C +   ++ G R  +  QSE+KL+   +YY+LTT  G QTLGEEYC++ ++      +P  P R  L+  +  A PY+ ++   ++  R
Sbjct:   62 NNNNNNNINRNNSNLYPSYADQPDILRSSQKDEYYKKLFEDQCFEMLTRITGPRFIMNRQSESKLLANTIYYLLTTMIGSQTLGEEYCNLRKIKDKTFSIPSIPDRIKLYFFHLLA-PYLIKKSLPKLFQR 191          
BLAST of FC921287 vs. ExPASy Swiss-Prot
Match: PEX10_MOUSE (Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  265 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAER 573
            A  PE++RAA+KDE Y   +  A  +A   L G +  + ++ E +L+  + Y+ LTT +G QTLGEEY  I QV   Q+  P+  RRA  +     +PY+ ++
Sbjct:    4 AGAPEVIRAAQKDEYYLGGLRSAAGEALHSLAGAKKWLEWRKEIELLSDIAYFGLTTIAGYQTLGEEYVGIIQVDPSQQRVPSRLRRAALVALHAVLPYLLDK 106          
BLAST of FC921287 vs. ExPASy Swiss-Prot
Match: PEX10_MACFA (Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  265 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERI 576
            A+ PE++RAA+KDE Y   +  A   A   L G R  + ++ E +L+  + Y+ LTT +G QTLGEEY  I +V   Q   P+  RR + +     +PY+ +++
Sbjct:    6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAGYQTLGEEYVSIVRVDPSQTRVPSWLRRGVLVTLHAVLPYLLDKV 109          
BLAST of FC921287 vs. ExPASy Swiss-Prot
Match: PEX10_HUMAN (Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  265 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAER 573
            A+ PE++RAA+KDE Y   +  A   A   L G R  + ++ E +L+  + Y+ LTT +G QTLGEEY  I QV   +   P+  RR + +     +PY+ ++
Sbjct:    6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDK 108          
The following BLAST results are available for this feature:
BLAST of FC921287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PEX10_ARATH1.509e-5269.14Peroxisome biogenesis factor 10 OS=Arabidopsis tha... [more]
PEX10_DICDI1.381e-1332.06Peroxisome biogenesis factor 10 OS=Dictyostelium d... [more]
PEX10_MOUSE3.076e-1336.89Peroxisome biogenesis factor 10 OS=Mus musculus GN... [more]
PEX10_MACFA6.852e-1335.58Peroxisome biogenesis factor 10 OS=Macaca fascicul... [more]
PEX10_HUMAN1.994e-1235.92Peroxisome biogenesis factor 10 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionC32103C05EF RVDevelopN Citrus clementina cDNA clone C32103C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921287 ID=FC921287; Name=FC921287; organism=Citrus clementina; type=EST; length=698bp
GGTTCATGCCTTCGACGATTTGCTTATCAGTATATACTAAAATGGAAATC
ACCACACACCTCCCCTAAAGTTTTGGAAAATATCTCTAAACTGCATGTTT
CTTTTAATATCTTGTTTTTACTTTTATTGTTTTGGAATCCAGAAAGGAAC
GGCGTCGTAGCTCTCTGGGTAGTAATTGATATCCGCTCATCTGAATCATC
AACGATCAGAAACGCGACGCACCAGCGAGAGATGGGTTCAGGCGAGACAC
GGCGGTTTCCACCGGCGGCTCAGCCAGAAATAATGAGAGCTGCCGAGAAA
GACGAGCAGTACGCCTCTTTCATCTACGATGCCTGCCGCGACGCCTTTCG
CCAACTCTTCGGTACAAGAGTTGCTGTAGCTTATCAGAGTGAGACAAAAC
TGGTCGGGCAGATGCTGTACTATGTATTAACAACAGGTTCCGGACAGCAA
ACACTGGGAGAGGAATACTGCGACATTACTCAGGTTGTAGGTCCTCAAAG
ACTCCCTCCAACGCCAGCAAGGCGTGCTCTTTTTATTGTATACCAGACAG
CAGTTCCTTACATAGCTGAAAGAATCAGCTCTAGAGTAGCTTCACGTGGG
ATTGCTCTTGCTGAATCTCAGTCAGATGAATTTGATAGATACAATGCTGC
AGGGAGCAGTCGAGATCAATCTTTAGAGACGATAGAATCTCCATCTTC
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