FC921290

Overview
NameFC921290
Unique NameFC921290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length386
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921290 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.781e-28
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = -2
Query:   44 PLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWVHLQYNLISVIICS 274
            PLI   S  RNLPDFKKSVKLKYVKLGYHYLITHGM+LFLSPLV+++AAQ+STFS  DL  LW HLQYNLISV++CS
Sbjct:    8 PLIE--SSDRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLRSLWEHLQYNLISVVVCS 82          
BLAST of FC921290 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.412e-17
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = -2
Query:   44 SRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWVHLQYNLISVIICS 250
            +R LPDF +SV LKYVKLGYHYLI++ + L L PL V+++ + S  +  DL  LW+HLQYNL+S+IICS
Sbjct:   26 TRMLPDFLQSVNLKYVKLGYHYLISNLLTLCLFPLAVVISVEASQMNPDDLKQLWIHLQYNLVSIIICS 94          
BLAST of FC921290 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = -2
Query:   44 RNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWVHLQYNLISVIICS 247
            R LP+F +SV +KYVKLGYHYLITH   L L PL+ ++  ++S  +  DLY +W+HLQYNL++ I  S
Sbjct:   23 RKLPNFLQSVNMKYVKLGYHYLITHLFKLCLVPLMAVLVTEISRLTTDDLYQIWLHLQYNLVAFIFLS 90          
BLAST of FC921290 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = -2
Query:   44 NQGKMTEPKP-NTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWVHLQYNLISVIICS 310
            NQ +   P P +     P     NLP+F  SV+LKYVKLGYHYLI++ +++ L PL+    A LS+F+  DL  L+  L+++ +S  + +
Sbjct:    4 NQNQPHRPVPVHVTNAEPNPNPNNLPNFLLSVRLKYVKLGYHYLISNALYILLLPLLAATIANLSSFTINDLSLLYNTLRFHFLSATLAT 93          
BLAST of FC921290 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.755e-11
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = -2
Query:   44 PSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWVHLQYNLISVIICS 253
            P   +P+F  SVKLKYVKLGY YL+ H +   L P++ IVA +L     +++ ++W  LQ++L+ V+  S
Sbjct:    2 PQAPMPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPEEILNVWNSLQFDLVQVLCSS 71          
The following BLAST results are available for this feature:
BLAST of FC921290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KCS11_ARATH1.781e-2877.923-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS4_ARATH2.412e-1757.973-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS9_ARATH1.324e-1552.943-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS19_ARATH1.978e-1138.893-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS6_ARATH5.755e-1141.433-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC32103C08EF RVDevelopN Citrus clementina cDNA clone C32103C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921290 ID=FC921290; Name=FC921290; organism=Citrus clementina; type=EST; length=386bp
GGCGAGTGAGAAAGTAAAGTGTCAAGAGGAAAACAAGCAAAGTTGAGCAT
ATGATAACAGAAATAAGATTGTACTGGAGATGCACCCAAAGATCATAAAG
GTCCTGAAAAGAAAACGTTGAAAGCTGTGCGGCAACTATGACTACAAGAG
GTGAAAGGAAGAGGAACATTCCATGAGTGATTAGGTAATGATATCCAAGT
TTCACATATTTTAGCTTAACTGACTTCTTGAAATCAGGGAGATTTCGTGA
TGGTGATGTTGGTGGGATCAAGGGCGTATTTGGTTTTGGCTCAGTCATTT
TCCCTTGATTGTCAAAACCCACCGGCGGATCGCTTGAATCTCGACAGAGA
AACCAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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