FC921294

Overview
NameFC921294
Unique NameFC921294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921294_ssr91 microsatellite FC921294_ssr91:91..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14285 contig Ccv1_Contig14285:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 75/182 (41.21%), Postives = 109/182 (59.89%), Query Frame = 2
Query:  155 VGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLAKSITIATTMVG 697
            +G+IG G+MG+SM +H+LN G+ V V+ RT  KA+ +L  GA   D+   L+ ++DV+ ++VGYPSDV  V    S+G +   + G  ++DMTT               K   A+DAPVSGGD GA+ GTLAI  GG++   +   P+F+LMG+ + Y G +G GQ  K+   I IA  M+G
Sbjct:    5 IGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYF-GSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIG 185          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 66/184 (35.87%), Postives = 95/184 (51.63%), Query Frame = 2
Query:  152 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKA-QPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGK-VNYMGGSGKGQFAKLAKSITIATTMVG 697
            +V +IG G+MG  M  HL+  G+ VTV+NRT +KA Q +   G   AD+P   A   D+VF+ VG   D+R V+L    G + G+  G I+VD TT                N + +DAPVSGG  GA+ G L +  GGD++    + P+ +   +    +G  G GQ  K+   I IA  + G
Sbjct:    3 KVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIVFTCVGNDDDLRQVVL-GEHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAGVVQG 185          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 57/165 (34.55%), Postives = 89/165 (53.94%), Query Frame = 2
Query:  140 PTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGG 634
            PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GAH+  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD+ V +  +  F  MGK ++  G
Sbjct:  246 PTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLG 409          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 60/175 (34.29%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  137 SPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKL 661
            +PT+ R+G++G G+MG  + ++LL  G+ VTV+NRT  K    +  GA L  +P  + S  D+ FS V  P   R ++L P SG L G+RPG   V+M+T               +    ++APVSG  + +  G L I A GD SV +  +  F  MGK ++      G  A++
Sbjct:  172 TPTDKRIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGP-SGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARM 345          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 61/195 (31.28%), Postives = 97/195 (49.74%), Query Frame = 2
Query:  113 TVASTDPASPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLAKSITIATTMVG 697
            + A     +PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++      G+    AK + I   + G
Sbjct:  256 STAVNGSVTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFF----LGEVGNAAKMMLIVNMVQG 445          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 60/187 (32.09%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  137 SPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLAKSITIATTMVG 697
            +PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++      G+    AK + I   + G
Sbjct:  263 TPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFF----LGEVGNAAKMMLIVNMVQG 444          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 60/187 (32.09%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  137 SPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLAKSITIATTMVG 697
            +PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++      G+    AK + I   + G
Sbjct:  264 TPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFF----LGEVGNAAKMMLIVNMVQG 445          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 60/187 (32.09%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  137 SPTNTRVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLFALMGKVNYMGGSGKGQFAKLAKSITIATTMVG 697
            +PT+ ++G++G G+MG  + ++LL  G+TVTV+NRT  K    +  GA L  +P  + S  D+ F+ V  P   + ++L P SG L G+RPG   VDM+T               +    ++APVSG  + +  G L I A GD  + +  +  F  MGK ++      G+    AK + I   + G
Sbjct:  264 TPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP-SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFF----LGEVGNAAKMMLIVNMVQG 445          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 2
Query:  152 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGSGKGQFAKLAKSITIA 682
            +VG+IG GIMG+ M  +LL AGY++ V +R       ++  GA  A +  ++A Q DV+ +++     V+ V L   +G + G +PG +++DM++               K    +DAPVSGG+  A  GTL++  GGD+++  K   L  A+ G V + G  G G   KLA  + +A
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL-GENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVA 178          
BLAST of FC921294 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 2
Query:  152 RVGWIGTGIMGRSMCAHLLNAGYTVTVFNRTLSKAQPLLDIGAHLADSPHSLASQSDVVFSIVGYPSDVRHVLLHPSSGALSGLRPGGIIVDMTTXXXXXXXXXXXXXXXKNCSAIDAPVSGGDRGAKTGTLAIFAGGDESVVQKLNPLF-ALMGKVNYMGGSGKGQFAKLAKSITIA 682
            +VG+IG GIMG+ M  +LL AGY++ V +R       ++  GA  A +  ++A Q DV+ +++     V+ V L   +G + G +PG +++DM++               K    +DAPVSGG+  A  GTL++  GGD+++  K   L  A+ G V + G  G G   KLA  + +A
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVAL-GENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVA 178          
The following BLAST results are available for this feature:
BLAST of FC921294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
YKWC_BACSU1.853e-3441.21Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
Y1503_SHEFN5.058e-2435.87Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
GLYR1_XENTR1.922e-2334.55Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_DANRE1.922e-2334.29Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_BOVIN9.539e-2331.28Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_RAT1.246e-2232.09Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_HUMAN1.246e-2232.09Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_CHICK1.246e-2232.09Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GARR_ECOLI4.734e-2233.152-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL64.734e-2233.152-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionC32103C12EF RVDevelopN Citrus clementina cDNA clone C32103C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921294 ID=FC921294; Name=FC921294; organism=Citrus clementina; type=EST; length=698bp
GATGCCACCGCTACTGCCACTCCTATTGGTCCTGCGCTCCCGCACGGCTC
ACTCTTACTCCCGCTCAGTTTCTTCACTCGTGACTCTCCTCCGCCGCCGC
CGCTCAATGGCTACTGTCGCATCCACCGATCCCGCCAGCCCCACCAACAC
CCGCGTCGGCTGGATCGGCACAGGCATCATGGGTCGATCCATGTGCGCCC
ACTTACTCAATGCCGGCTACACCGTCACCGTCTTCAACCGCACCCTCTCC
AAGGCCCAGCCTCTCCTCGACATCGGTGCCCACCTCGCCGACTCCCCCCA
TTCGCTCGCTTCCCAATCCGACGTCGTTTTCTCCATAGTCGGCTACCCTT
CCGACGTCCGCCACGTCCTCCTCCACCCCTCTTCCGGCGCCCTCTCTGGC
CTTCGTCCCGGTGGAATCATCGTCGACATGACCACCTCCGAACCCTCCCT
CGCCTCCGAGTTATCCGCCGCCGCCTCCTCCAAAAACTGCTCCGCCATCG
ACGCCCCTGTGTCCGGCGGTGACCGCGGCGCCAAAACCGGAACCCTCGCT
ATATTCGCCGGAGGGGACGAATCCGTAGTTCAAAAGTTAAATCCCCTTTT
TGCCCTCATGGGGAAAGTTAATTACATGGGTGGCAGTGGGAAAGGACAAT
TCGCGAAGCTGGCGAAATCAATCACGATCGCTACTACGATGGTTGGAT
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