FC921297

Overview
NameFC921297
Unique NameFC921297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_DROME (Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.157e-31
Identity = 68/166 (40.96%), Postives = 105/166 (63.25%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIHLMGNLPQEELEKSNLASKL 665
            A F +G FW +E+++G   GV+RTTVGYAGGS   P +R +GDH E ++++YDP VI+F++LL++FW +H+    +G    +  QY S+I  +  E+ ++A  SK  EQ +    I+TT+I     FYPAE  HQK+ L+ +  L   + NL  + L+ S +A+KL
Sbjct:   42 ATFGMGCFWGAESLYGATRGVLRTTVGYAGGSSDLPTYRKMGDHTEVLEIDYDPTVISFKELLDLFWNNHE----YGLTTPIKRQYASLILYHDEEQKQVAHASKLEEQERRAPEIITTEIASKENFYPAEAYHQKYRLQGHKDLASSL-NLSPKLLQTSYVATKL 202          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_RHORT (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=msrA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.121e-26
Identity = 64/145 (44.14%), Postives = 87/145 (60.00%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER-EQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            +  A FA G FW  E  F  + GV  TTVGY GG    P +R +  GD  HAE+V+V+YDP  + + QLL+VFW +HD  QV  QGPD+G+QYRS IF +   +   A  S+ R EQ  + S  + T+I+    F+PAE  HQ++
Sbjct:    1 MATATFAAGCFWGVEETFRKIPGVTGTTVGYTGGHFKEPTYRQVCAGDTGHAEAVRVDYDPDKVTYEQLLDVFWAAHDPTQVDRQGPDIGDQYRSAIFYHDAGQEAAAGASRARLEQSGALSRAIATRIEPAGPFWPAEEYHQRY 145          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALAR (Peptide methionine sulfoxide reductase msrA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.497e-26
Identity = 68/155 (43.87%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V+V YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+S  A  S+ER Q     +     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRVVYDPAVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQSTAAHASRERFQSAMADAGDERPITTEIAHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_METMP (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis GN=msrA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.497e-26
Identity = 62/154 (40.26%), Postives = 93/154 (60.39%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPFLIH 608
            +K  VF +G FW +E VF  +NGVV T VG+ GG+  NP +    R    H E V+++YDP +I++ +LL++FW +H+      QG DVG QY S IF    E+  +A  S E+ Q  +   IVT  I++  +FYPAE  HQK+ +K+N  +++
Sbjct:    4 IKTTVFGMGCFWGAEEVFRKINGVVSTEVGFMGGTIKNPTYGQVCRGKSGHIEVVKIDYDPEIISYDELLDLFWNNHNPTTPNKQGWDVGEQYSSYIFYFDDEQKLIAEKSLEKMQENTDLKIVTI-IEKAGSFYPAEEYHQKYFMKKNNSILN 156          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ENTS8 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +      HAE+V+V YDP VI++ QLL+VFW +HD  Q   QG DVG QYRS I+    E+   A  S ER +   +++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEVALFAMGCFWGVERLFWALPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPNVISYEQLLQVFWENHDPAQGMRQGNDVGTQYRSAIYPLTPEQEAAAQASLERFRAAMEAAGDYRHITTEIAPAKPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_SALSV (Peptide methionine sulfoxide reductase msrA OS=Salmonella schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 66/155 (42.58%), Postives = 90/155 (58.06%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL++FW +HD  Q   QG D G QYRS I+    E+S  A  S+ER Q    ++     +TT+I     FY AE EHQ++ L +NP+
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQSAAAHASRERFQSAMAAAGNHRPITTEITHATPFYYAEDEHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  168 AVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDH----AESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQKF 578
            A FA G FWS E +F  + GV +T VGY  G+  NP +R +       AE+V++EYDP  + + QLL +FW+ HD   +  QG DVG QYRS I+ +  E+   A  SKE+EQ+K K  I +T+I     FYPAE EHQ++
Sbjct:    4 ATFAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWSKHDPTTLNRQGNDVGTQYRSGIYYHNEEQKNEAIASKEKEQLKYKDPI-STEILPAGVFYPAETEHQQY 143          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECO5E (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L+GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECO57 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 GN=msrA PE=3 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L+GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQY-LHKNPY 196          
BLAST of FC921297 vs. ExPASy Swiss-Prot
Match: MSRA_ECO27 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.265e-26
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  159 LKAAVFALGSFWSSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEHQKFELKRNPF 599
            ++ A+FA+G FW  E +F  L+GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +HQ++ L +NP+
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQY-LHKNPY 196          
The following BLAST results are available for this feature:
BLAST of FC921297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
MSRA_DROME1.157e-3140.96Peptide methionine sulfoxide reductase OS=Drosophi... [more]
MSRA_RHORT1.121e-2644.14Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_SALAR2.497e-2643.87Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_METMP2.497e-2640.26Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_ENTS83.261e-2642.58Peptide methionine sulfoxide reductase msrA OS=Ent... [more]
MSRA_SALSV4.259e-2642.58Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_DICDI4.259e-2644.68Peptide methionine sulfoxide reductase OS=Dictyost... [more]
MSRA_ECO5E7.265e-2642.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO577.265e-2642.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO277.265e-2642.58Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionC32103D03EF RVDevelopN Citrus clementina cDNA clone C32103D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921297 ID=FC921297; Name=FC921297; organism=Citrus clementina; type=EST; length=713bp
CCGGGGCTCTTACGCTGTTTGAGACTATCTCTATGGTTCTCTCAAAGAGA
TATCTATTTTTTTCCGTCCTCTATCTTCTTTTATTAACGGATACAGCATT
GTGTATTCGGCTTCCGGATCGGGTCTCTACCTCCGTTAATGACGAATTGG
GCCGGCCCCTAAAAGCGGCGGTTTTCGCTCTTGGTAGCTTCTGGAGTTCC
GAAGCCGTATTCGGCTGCTTAAACGGAGTGGTAAGGACCACTGTCGGCTA
CGCTGGCGGATCCAAAACCAACCCCGAATTCCGCAACCTTGGTGATCATG
CCGAGTCCGTACAGGTTGAATATGATCCCAGGGTGATCAATTTTAGGCAA
CTTTTGGAAGTTTTTTGGACCAGTCATGATTGTAGGCAAGTATTTGGGCA
AGGTCCTGATGTGGGTAATCAATACAGGTCCATTATTTTCACTAATGGAA
CAGAAGAATCCAGATTGGCCGCTCATAGTAAAGAAAGGGAGCAGATGAAA
TCGAAGAGCAGCATAGTGACTACTCAAATTCAACAACTCGTAGCTTTTTA
TCCTGCAGAACCGGAACATCAGAAGTTTGAGTTGAAACGAAATCCTTTCC
TTATTCACCTTATGGGAAACTTACCTCAAGAGGAGCTCGAGAAGTCAAAT
CTGGCNAGCAAACTAACAGTTATGCAGCAGAGCTTTGCTCTCCTAGGATT
CAAAACAGATTGA
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