FC921300

Overview
NameFC921300
Unique NameFC921300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921300_ssr64 microsatellite FC921300_ssr64:64..84. BLAST: Citrus ESTs to Populus V2 proteins
Homology
BLAST of FC921300 vs. ExPASy Swiss-Prot
Match: CCNB1_SOYBN (G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 74/197 (37.56%), Postives = 88/197 (44.67%), Query Frame = 2
Query:   92 MASRPIVPRQARGEAVVGGVAIKQQKKAGAVVAEGKNRHALNDIGNLVTVNG-VDGKPQPQISRPITRSF--CXXXXXXXXXXXXXXXXXXCVNM-NKSTVLLDGIGVGKKALXXXXXXXXXXXXXXXXXXXXXXXXXXXEVIELSPDTXXXXXXXXXXXXXXXXXXXXXXQTLTSVLTARSKAACGLAQKPKNRLL 670
            MASR +  +QARGEAVVGG   KQQKK G  VA+G+NR AL DIGNL  V G VD KP    +RPITRSF                     C N+     V  +G+ V K+A                              I+ SPD                        TLTSVLTARSKAACG+  KPK +++
Sbjct:    1 MASRIVQQQQARGEAVVGGG--KQQKKNG--VADGRNRKALGDIGNLANVRGVVDAKP----NRPITRSFGAQLLANAQAAAAADNSKRQACANVAGPPAVANEGVAVAKRAAPKPVSKKVIVKPKPSEKVTD---------IDASPD--KKEVLKDKKKEGDANPKKKSQHTLTSVLTARSKAACGITNKPKEQII 178          
BLAST of FC921300 vs. ExPASy Swiss-Prot
Match: CCN2_ANTMA (G2/mitotic-specific cyclin-2 OS=Antirrhinum majus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 66/194 (34.02%), Postives = 84/194 (43.30%), Query Frame = 2
Query:   92 MASR-PIVPRQARGEAVVGGVAIKQQKKAGAVVAEGKNRHALNDIGNLVTVNGVDGKPQPQISRPITRSFCXXXXXXXXXXXXXXXXXXCVNMNKSTVLLDGIGVGKKALXXXXXXXXXXXXXXXXXXXXXXXXXXXEVIELSPDTXXXXXXXXXXXXXXXXXXXXXXQTLTSVLTARSKAACGLAQKPKNRLL 670
            M SR  +V +Q RG+ V G  AIKQ+  A     E KNR AL DIGN+VTV GV+GK  PQ+SRPITR FC                      NK+++ ++  G                                 E+IE+SPDT                       TLTS LTARSKAA  +  KPK +++
Sbjct:    1 MGSRHQVVQQQNRGDVVPG--AIKQKSMA----VEKKNRRALGDIGNVVTVRGVEGKALPQVSRPITRGFC--------AQLIANAEAAAAENNKNSLAVNAKGA-------DGALPIKRAVARVPVQKKTVKSKPQEIIEISPDTEKKKAPVLEKEITGEKSLKKKAPTLTSTLTARSKAASVVRTKPKEQIV 173          
BLAST of FC921300 vs. ExPASy Swiss-Prot
Match: CCN1_ANTMA (G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 68/196 (34.69%), Postives = 87/196 (44.39%), Query Frame = 2
Query:   92 MASRPIVPRQARGEAVVGGVAIKQQKKAGAVVAEGKNRHALNDIGNLVTVNGVDGKPQ--PQISRPITRSFCXXXXXXXXXXXXXXXXXXCVNMNKSTVLLDGIGVGKKALXXXXXXXXXXXXXXXXXXXXXXXXXXXEVIELSPDT-XXXXXXXXXXXXXXXXXXXXXXQTLTSVLTARSKAACGLAQKPKNRLL 670
            M SR IV +Q R EA V G A+KQ+  AG    E KNR AL DIGNLVTV GVDGK +  PQ+SRP+TRSFC                       K  +++DG+   ++                             E+I +SPD+                        TLTS LTARSKAA G+  K K +++
Sbjct:    1 MGSRNIVQQQNRAEAAVPG-AMKQKNIAG----EKKNRRALGDIGNLVTVRGVDGKAKAIPQVSRPVTRSFCAQLLANAQTAAADNNKINA----KGAIVVDGVLPDRRV---------AAARVPAQKKAAVVKPRPEEIIVISPDSVAEKKEKPIEKEKAAEKSAKKKAPTLTSTLTARSKAASGVKTKTKEQIV 178          
The following BLAST results are available for this feature:
BLAST of FC921300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CCNB1_SOYBN8.720e-1637.56G2/mitotic-specific cyclin S13-6 OS=Glycine max PE... [more]
CCN2_ANTMA4.328e-1534.02G2/mitotic-specific cyclin-2 OS=Antirrhinum majus ... [more]
CCN1_ANTMA5.652e-1534.69G2/mitotic-specific cyclin-1 OS=Antirrhinum majus ... [more]
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Properties
Property NameValue
Genbank descriptionC32103D06EF RVDevelopN Citrus clementina cDNA clone C32103D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921300 ID=FC921300; Name=FC921300; organism=Citrus clementina; type=EST; length=700bp
GAGTTTCTCACAATCCAAAGAAAGTTTCAGAAAGAGAGACAAGAGATATC
TAAAAGAAGAAACAGAAGAAGAAGAAGAAGAAGAATCAGAAATGGCTTCC
AGACCCATTGTTCCACGACAAGCTAGAGGTGAGGCAGTTGTAGGAGGAGT
AGCAATTAAGCAGCAGAAGAAAGCCGGGGCGGTGGTGGCTGAGGGGAAAA
ACCGCCATGCACTTAACGATATTGGCAATCTTGTTACTGTCAATGGTGTT
GATGGCAAGCCTCAGCCTCAGATCTCTCGCCCCATCACCAGGAGTTTCTG
CGCTCAATTACTTGCGAATGCACAAGCAGCTGCTGAGAACAACAAGAAAC
AGGCTTGTGTTAATATGAACAAATCAACTGTTCTTCTTGATGGGATTGGA
GTAGGTAAAAAAGCTCTGCCAGCAAAGCCAGTTCAGAAGAAAGTAACCGT
TAAACCAAAGGCTCAGGCTCAGCAGCCTCAGCCTCAGCCTCGGCCTCAGG
AAGTGATTGAGCTAAGTCCTGATACAGAGAAGGAGAAGGTTGCTGCGAAC
AAGAAGAAGAAAGAGGGAGAAGTATCAGCCAAGAAGAAATCACAGACACT
TACTTCAGTTCTTACTGCTAGAAGCAAGGCTGCTTGTGGTCTGGCCCAGA
AACCAAAGAACAGATTGTTGATATTGATGCTAAGATGCTAACATGATTTG
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