FC921333

Overview
NameFC921333
Unique NameFC921333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10782 contig Ccv1_Contig10782:60..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: SCPDH_ARATH (Probable mitochondrial saccharopine dehydrogenase At5g39410 OS=Arabidopsis thaliana GN=At5g39410 PE=1 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 1.632e-85
Identity = 151/213 (70.89%), Postives = 189/213 (88.73%), Query Frame = 3
Query:   45 SQIPE-LFDVIILGASGFTGKYVVREALKLFNLPSS-PIKNLALAGRNPTKVKQALQWASPSHS--LSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLESDKRIVGNFGTYESAVLGVANAQEVQKLKQ 671
            +Q PE ++D++ILGASGFTGKYVVREALK    PSS P+K+LALAGRNPT++ Q+L+WA+  +    S+ ILTADT+DP SL RLC+QTKL+LNCVGP+R+HGDPV +AC  SGCDYLDISGEPEFMERMEA YH++A ETGSL+VSACGFDSIPAELG++FN++QW+ P+VPNQIEAY+SLESDK+I GNFGTYESAVLGVANA+++++L++
Sbjct:    4 TQKPEPVYDMVILGASGFTGKYVVREALKFLQTPSSSPLKSLALAGRNPTRLTQSLEWAARPNPPPSSVAILTADTSDPDSLRRLCTQTKLILNCVGPFRIHGDPVVSACADSGCDYLDISGEPEFMERMEANYHDRAEETGSLIVSACGFDSIPAELGLLFNAKQWVSPSVPNQIEAYLSLESDKKIAGNFGTYESAVLGVANAEKLKELRR 216          
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: SCPDH_MOUSE (Probable saccharopine dehydrogenase OS=Mus musculus GN=Sccpdh PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.083e-36
Identity = 79/210 (37.62%), Postives = 130/210 (61.90%), Query Frame = 3
Query:   63 FDVIILGASGFTGKYVVREALKLFNLPSSPIKNL--ALAGRNPTKVKQALQWAS-----PSHSLSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLES-DKRIVGNFGTYESAVLGVANAQEVQKLK 668
            F +++ GASGFTG++V  E  +   + S     L  A+AGR+  K++Q L+ A+     PS S  + ++  D ++P SL  +  Q KL+LNCVGPYR +G+PV  AC+ +G   +DI GEP+F+E M A+YHEKA E G  ++ + GFDSIPA+LGV++   Q         +E+++++ +  + +  + GT++SA+ G  +   ++KL+
Sbjct:    8 FHLVVFGASGFTGQFVTEEVARE-QIASEQSSRLPWAVAGRSKEKLQQVLEKAAQKLGRPSLSSEVGVIICDISNPASLDEMAKQAKLVLNCVGPYRFYGEPVVKACIENGTSCIDICGEPQFLELMHAKYHEKAAEKGVYIIGSSGFDSIPADLGVLYTRNQM--NGTLTAVESFLTINTGPEGLCIHDGTWKSAIYGFGDKGSLRKLR 214          
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: SCPDH_HUMAN (Probable saccharopine dehydrogenase OS=Homo sapiens GN=SCCPDH PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.450e-33
Identity = 75/209 (35.89%), Postives = 128/209 (61.24%), Query Frame = 3
Query:   63 FDVIILGASGFTGKYVVRE-ALKLFNLPSSPIKNLALAGRNPTKVKQALQWAS-----PSHSLSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLESDKRIVG-NFGTYESAVLGVANAQEVQKLK 668
            F +++ GASGFTG++V  E A +  +   S     A+AGR+  K+++ L+ A+     P+ S  + I+  D  +P SL  +  Q  ++LNCVGPYR +G+PV  AC+ +G   +DISGEP+F+E M+ +YHEKA + G  ++ + GFDSIPA+LGV++   +         +E+++++ S    +  + GT++SA+ G  +   ++KL+
Sbjct:    8 FHLVVFGASGFTGQFVTEEVAREQVDPERSSRLPWAVAGRSREKLQRVLEKAALKLGRPTLSSEVGIIICDIANPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGASCIDISGEPQFLELMQLKYHEKAADKGVYIIGSSGFDSIPADLGVIYTRNKM--NGTLTAVESFLTIHSGPEGLSIHDGTWKSAIYGFGDQSNLRKLR 214          
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: SCPDH_RAT (Probable saccharopine dehydrogenase OS=Rattus norvegicus GN=Sccpdh PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.894e-33
Identity = 76/210 (36.19%), Postives = 127/210 (60.48%), Query Frame = 3
Query:   63 FDVIILGASGFTGKYVVREALKLFNLPSSPIKNL--ALAGRNPTKVKQALQWASP-----SHSLSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLES-DKRIVGNFGTYESAVLGVANAQEVQKLK 668
            F +++ GASGFTG++V  E  +   + S     L  A+AGR+  K++Q L+ A+      + S  + I+  D ++P SL  +  +  L+LNCVGPYR +G+PV  AC+ +G   +DI GEP+F+E M  +YHEKA E G  ++ + GFDSIPA+LGV++   Q         +E+++++ S  + +  + GT++SA+ G  +   ++KL+
Sbjct:    8 FQLVVFGASGFTGQFVTEEVARE-QMASEQSSRLPWAVAGRSKEKLQQVLEKAAQKLGRATLSSEVGIIICDISNPASLDEMAKKATLVLNCVGPYRFYGEPVVKACIENGTSCIDICGEPQFLELMHVKYHEKAAEKGVYIIGSSGFDSIPADLGVLYTRNQM--NGTLTAVESFLTINSGPEGLCIHDGTWKSAIYGFGDKGSLRKLR 214          
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: SCPDH_BOVIN (Probable saccharopine dehydrogenase OS=Bos taurus GN=SCCPDH PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.473e-33
Identity = 77/209 (36.84%), Postives = 126/209 (60.29%), Query Frame = 3
Query:   63 FDVIILGASGFTGKYVVREALKLFNLPSSPIK-NLALAGRNPTKVKQALQWAS-----PSHSLSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLES-DKRIVGNFGTYESAVLGVANAQEVQKLK 668
            F +++ GASGFTG++V  E  +    P        A+AGR+  K+ + L+ A+     P+ S  + I+  D T+P SL  +  Q  ++LNCVGPYR +G+PV  AC+ +G   +DISGEP+F+E M  +YHEKA E G  ++ + GFDSIPA+LGV++   +         +E+++++ S  + +  + GT++SAV G  +   ++KL+
Sbjct:    8 FHLVVFGASGFTGQFVTEEVAREQVSPERTSHLPWAVAGRSREKLLRVLERAAMKLGRPTLSSEVGIIICDITNPASLDEMAKQATVVLNCVGPYRFYGEPVIKACIENGTSCIDISGEPQFLELMYWKYHEKAAEKGVYIIGSSGFDSIPADLGVIYTRNKM--NGTLTAVESFLTISSGPEGLCVHDGTWKSAVYGFGDKSNLKKLR 214          
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: SCPDH_PONAB (Probable saccharopine dehydrogenase OS=Pongo abelii GN=SCCPDH PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 74/209 (35.41%), Postives = 127/209 (60.77%), Query Frame = 3
Query:   63 FDVIILGASGFTGKYVVRE-ALKLFNLPSSPIKNLALAGRNPTKVKQALQWAS-----PSHSLSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLESDKRIVG-NFGTYESAVLGVANAQEVQKLK 668
            F +++ GASGFTG++V  E A +  +   S     A+AGR+  K+++ L+ A+     P+ S  + I+  D  +P SL  +  Q  ++ NCVGPYR +G+PV  AC+ +G   +DISGEP+F+E M+ +YHEKA + G  ++ + GFDSIPA+LGV++   +         +E+++++ S    +  + GT++SA+ G  +   ++KL+
Sbjct:    8 FHLVVFGASGFTGQFVTEEVAREQVDPERSSRLPWAVAGRSREKLQRVLEKAALKLGRPTLSSEVGIIICDIANPASLDEMAKQATVVPNCVGPYRFYGEPVIKACIENGASCIDISGEPQFLELMQLKYHEKAADKGVYIIGSSGFDSIPADLGVIYTRNKM--NGTLTAVESFLTIHSGPEGLSIHDGTWKSAIYGFGDQSNLRKLR 214          
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: TAER_MYCTU (Trans-acting enoyl reductase OS=Mycobacterium tuberculosis GN=Rv2953 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 63/204 (30.88%), Postives = 109/204 (53.43%), Query Frame = 3
Query:   63 FDVIILGASGFTGKYVVREALKLFNLPSSPIKNLALAGRNPTKVKQALQWASPSHSLSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLES-DKRIV--GNFGTYESAVLGVANAQEVQKL 665
            FD+++ GA+GF+GK             S     +ALAGR+  +++       P+ +   P++ AD + P +L  + ++ +++L  VGPY  +G P+ AAC  +G DY D++GE  F       YH++A +TG+ ++ ACGFDSIP++L V    R+ +        +  + L S  +R V  G+  TY  A+   ++  E ++L
Sbjct:    8 FDIVLYGATGFSGKLTAEHLAH-----SGSTARIALAGRSSERLRGVRMMLGPN-AADWPLILADASQPLTLEAMAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGELMFCRNSIDLYHKQAADTGARIILACGFDSIPSDLNVYQLYRRSVEDGTGELCDTDLVLRSFSQRWVSGGSVATYSEAMRTASSDPEARRL 205          
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: TAER_MYCTA (Trans-acting enoyl reductase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_2980 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 63/204 (30.88%), Postives = 109/204 (53.43%), Query Frame = 3
Query:   63 FDVIILGASGFTGKYVVREALKLFNLPSSPIKNLALAGRNPTKVKQALQWASPSHSLSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLES-DKRIV--GNFGTYESAVLGVANAQEVQKL 665
            FD+++ GA+GF+GK             S     +ALAGR+  +++       P+ +   P++ AD + P +L  + ++ +++L  VGPY  +G P+ AAC  +G DY D++GE  F       YH++A +TG+ ++ ACGFDSIP++L V    R+ +        +  + L S  +R V  G+  TY  A+   ++  E ++L
Sbjct:    8 FDIVLYGATGFSGKLTAEHLAH-----SGSTARIALAGRSSERLRGVRMMLGPN-AADWPLILADASQPLTLEAMAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGELMFCRNSIDLYHKQAADTGARIILACGFDSIPSDLNVYQLYRRSVEDGTGELCDTDLVLRSFSQRWVSGGSVATYSEAMRTASSDPEARRL 205          
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: TAER_MYCBP (Trans-acting enoyl reductase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=BCG_2974 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 63/204 (30.88%), Postives = 109/204 (53.43%), Query Frame = 3
Query:   63 FDVIILGASGFTGKYVVREALKLFNLPSSPIKNLALAGRNPTKVKQALQWASPSHSLSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLES-DKRIV--GNFGTYESAVLGVANAQEVQKL 665
            FD+++ GA+GF+GK             S     +ALAGR+  +++       P+ +   P++ AD + P +L  + ++ +++L  VGPY  +G P+ AAC  +G DY D++GE  F       YH++A +TG+ ++ ACGFDSIP++L V    R+ +        +  + L S  +R V  G+  TY  A+   ++  E ++L
Sbjct:    8 FDIVLYGATGFSGKLTAEHLAH-----SGSTARIALAGRSSERLRGVRMMLGPN-AADWPLILADASQPLTLEAMAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGELMFCRNSIDLYHKQAADTGARIILACGFDSIPSDLNVYQLYRRSVEDGTGELCDTDLVLRSFSQRWVSGGSVATYSEAMRTASSDPEARRL 205          
BLAST of FC921333 vs. ExPASy Swiss-Prot
Match: TAER_MYCBO (Trans-acting enoyl reductase OS=Mycobacterium bovis GN=Mb2977 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 63/204 (30.88%), Postives = 109/204 (53.43%), Query Frame = 3
Query:   63 FDVIILGASGFTGKYVVREALKLFNLPSSPIKNLALAGRNPTKVKQALQWASPSHSLSIPILTADTTDPPSLHRLCSQTKLLLNCVGPYRLHGDPVAAACVHSGCDYLDISGEPEFMERMEARYHEKAVETGSLLVSACGFDSIPAELGVMFNSRQWIPPAVPNQIEAYVSLES-DKRIV--GNFGTYESAVLGVANAQEVQKL 665
            FD+++ GA+GF+GK             S     +ALAGR+  +++       P+ +   P++ AD + P +L  + ++ +++L  VGPY  +G P+ AAC  +G DY D++GE  F       YH++A +TG+ ++ ACGFDSIP++L V    R+ +        +  + L S  +R V  G+  TY  A+   ++  E ++L
Sbjct:    8 FDIVLYGATGFSGKLTAEHLAH-----SGSTARIALAGRSSERLRGVRMMLGPN-AADWPLILADASQPLTLEAMAARAQVVLTTVGPYTRYGLPLVAACAKAGTDYADLTGELMFCRNSIDLYHKQAADTGARIILACGFDSIPSDLNVYQLYRRSVEDGTGELCDTDLVLRSFSQRWVSGGSVATYSEAMRTASSDPEARRL 205          
The following BLAST results are available for this feature:
BLAST of FC921333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SCPDH_ARATH1.632e-8570.89Probable mitochondrial saccharopine dehydrogenase ... [more]
SCPDH_MOUSE9.083e-3637.62Probable saccharopine dehydrogenase OS=Mus musculu... [more]
SCPDH_HUMAN1.450e-3335.89Probable saccharopine dehydrogenase OS=Homo sapien... [more]
SCPDH_RAT1.894e-3336.19Probable saccharopine dehydrogenase OS=Rattus norv... [more]
SCPDH_BOVIN2.473e-3336.84Probable saccharopine dehydrogenase OS=Bos taurus ... [more]
SCPDH_PONAB9.399e-3335.41Probable saccharopine dehydrogenase OS=Pongo abeli... [more]
TAER_MYCTU3.031e-2330.88Trans-acting enoyl reductase OS=Mycobacterium tube... [more]
TAER_MYCTA3.031e-2330.88Trans-acting enoyl reductase OS=Mycobacterium tube... [more]
TAER_MYCBP3.031e-2330.88Trans-acting enoyl reductase OS=Mycobacterium bovi... [more]
TAER_MYCBO3.031e-2330.88Trans-acting enoyl reductase OS=Mycobacterium bovi... [more]

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Properties
Property NameValue
Genbank descriptionC32103G04EF RVDevelopN Citrus clementina cDNA clone C32103G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921333 ID=FC921333; Name=FC921333; organism=Citrus clementina; type=EST; length=673bp
AAGAAAAAAAAGAAGAATCAAGAAAGAACACAATGCAAGCGCAGAGCCAG
ATTCCGGAATTATTTGATGTAATAATATTGGGAGCTTCAGGCTTCACAGG
CAAGTATGTGGTGAGAGAAGCCTTAAAGTTGTTCAATCTTCCTTCTTCTC
CTATCAAAAACCTAGCTTTGGCAGGCCGCAACCCCACCAAGGTTAAGCAA
GCCCTCCAATGGGCCTCCCCTTCCCATTCCCTTTCAATTCCGATCCTCAC
CGCTGACACCACCGACCCACCTTCCCTCCACCGCCTCTGCTCCCAAACCA
AGCTGCTTCTCAACTGCGTTGGCCCCTATCGCCTCCATGGAGATCCCGTT
GCCGCCGCCTGCGTGCACTCCGGGTGTGACTACTTGGATATAAGTGGGGA
GCCAGAGTTCATGGAGAGAATGGAGGCCAGGTACCACGAGAAGGCTGTGG
AAACAGGTTCTTTGCTGGTTTCTGCATGTGGATTTGATTCCATTCCTGCT
GAATTGGGGGTAATGTTCAATTCCAGGCAGTGGATACCCCCGGCGGTGCC
AAACCAAATTGAGGCTTACGTTAGCCTAGAGTCTGATAAAAGAATTGTGG
GAAATTTTGGTACATATGAGTCTGCTGTTTTGGGTGTGGCCAATGCTCAA
GAAGTGCAAAAGCTGAAGCAAAT
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