FC921337

Overview
NameFC921337
Unique NameFC921337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13000 contig Ccv1_Contig13000:381..1056. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921337 vs. ExPASy Swiss-Prot
Match: SKI31_ARATH (F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.117e-73
Identity = 121/181 (66.85%), Postives = 154/181 (85.08%), Query Frame = 2 
Query:  128 RIDTGIFSKIPPELFTHILKFLSSEDLVSCSLVCRFLNYAASDESLWRRLYCMRWGLLPPTNNLRVCAWKKLYIQRDKEDLAKLVRSCPTEFKEYYIQMQAAKKSQAPLPSQVKDDRIIIDKTVGDQVSLWKSSKGLTDNVLTDHACSGDLCTYHQVGNLFVCEKTGYVHVCDDTCREMAM 670
            RI++G+F+ +P ELF HILKFLSSEDLVSCSLVC+FLN+AA+DESLWRRLYC+RWGL  P+  LR  AWKKLYI RD++D+ +LVR+CP++FKEYY+ MQAAK+SQAPLPSQ+ DDRII+D TV +QVSLWK SKGLTD  +T H C G  C+YHQ+ ++F+C++TG VHVCDD C+E+ +
Sbjct:   65 RIESGVFTNVPTELFRHILKFLSSEDLVSCSLVCKFLNFAAADESLWRRLYCIRWGLTLPSRKLRESAWKKLYIDRDEQDMIELVRTCPSDFKEYYVHMQAAKRSQAPLPSQMVDDRIILDNTVLEQVSLWKKSKGLTDKAVTGHICLGTKCSYHQIDDVFICKETGNVHVCDDNCKEVIL 245
The following BLAST results are available for this feature:
BLAST of FC921337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI31_ARATH1.117e-7366.85F-box protein SKIP31 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionC32103G08EF RVDevelopN Citrus clementina cDNA clone C32103G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921337 ID=FC921337; Name=FC921337; organism=Citrus clementina; type=EST; length=676bp
ACCGAAAAAGAAGAAATTGTGCGTGGAGAAATTCTCAGCCACGGGCTCGT
GCTCGGGGTCGGGCTCGGATAGTATTAGTAACAATAATAATTTTAATAAT
AAAAGTGAGATTCATTCTAGTCCTAATAGAATTGATACTGGAATTTTCAG
CAAGATTCCGCCTGAATTGTTCACGCACATACTCAAATTCCTGTCTTCTG
AGGATCTTGTATCATGTTCGCTGGTTTGTAGATTCCTGAATTATGCTGCT
TCTGATGAGTCCTTGTGGCGTCGCTTATACTGTATGCGATGGGGTCTGTT
GCCCCCAACCAACAATTTACGAGTTTGTGCTTGGAAAAAGCTTTATATTC
AGCGCGATAAGGAAGACTTGGCCAAACTAGTTAGAAGTTGCCCAACTGAG
TTTAAAGAGTACTATATCCAGATGCAAGCTGCTAAGAAAAGCCAAGCACC
ACTTCCTTCACAGGTGAAAGATGATCGGATCATTATTGACAAGACAGTTG
GGGATCAAGTTTCTTTGTGGAAAAGCAGTAAGGGCTTGACTGATAACGTG
CTCACTGACCATGCTTGTTCTGGAGATCTGTGCACTTACCACCAAGTTGG
TAATTTATTTGTTTGTGAGAAGACTGGATATGTTCATGTTTGTGATGATA
CATGCAGAGAGATGGCTATGGACGCC
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