FC921341

Overview
NameFC921341
Unique NameFC921341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921341_ssr56 microsatellite FC921341_ssr56:56..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11737 contig Ccv1_Contig11737:83..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.471e-57
Identity = 100/139 (71.94%), Postives = 120/139 (86.33%), Query Frame = 2
Query:  269 KPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            KPGLGDLPE+CVA+I+ +LDP EIC+ ++LNRAFRGAS AD VWESKLP NYR ++E++ G   ++L KR +YA L R+NSFD  TKKVW+DK T GVCLSISAKGL+ITGIDDRRYW+HIPT+ESRF+SVAYLQQIWW
Sbjct:   25 KPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWW 163          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.035e-54
Identity = 96/161 (59.63%), Postives = 124/161 (77.02%), Query Frame = 2
Query:  203 MGANFSALFRDPNGATPGSAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            MG+ FS   ++ +         +PGLGDLPESCVALI+ +LDP EIC+ ++LN AF GAS ADFVWESKLPP+Y+ ++E++ G    +L KR+I+  L R+NSFD G KK W+DK TGG+CL  SAKGL+ITGIDDRRYW+HIP+++SRF SVAY+QQIWW
Sbjct:    1 MGSGFSLFQKNLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWW 161          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.280e-48
Identity = 89/137 (64.96%), Postives = 111/137 (81.02%), Query Frame = 2
Query:  278 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLK-KDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            L DLPE+CVALI+  LDP EIC+LARLNR FR AS ADF+WESKLP NYR +  +VF ++    L K+++YA+L + N FD GTK++W+DK+TG +CLSIS+K L ITGIDDRRYW+HIPT+ESRF S AY+QQIWW
Sbjct:   25 LVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWW 161          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.493e-44
Identity = 89/161 (55.28%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  203 MGANFSALFRDPNGATPGSAAAKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            MG++ S L    NG   G     PGLGD+PESCVA +   L P EIC LA LNR+FRGA+ +D VWE KLP NY+ L++ +  +    L K++I+A L R   FD   K+VW+D+ TG VC++ISA+G++ITGI+DRRYWN IPTEESRF  VAYLQQIWW
Sbjct:    1 MGSSLSNLNDGTNGLAMG-----PGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWW 156          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.415e-39
Identity = 78/144 (54.17%), Postives = 101/144 (70.14%), Query Frame = 2
Query:  275 GLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLK----KD---LGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            GL D+PE+C+  +   ++P EIC LAR+N++F  AS +D VWE KLP NY+ L+  +  D +    KD     K+EIYARLCR N FD GTK+ WLDK +G V L+IS K + ITGIDDRRYW HI ++ESRF S+ YL+QIWW
Sbjct:   20 GLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWW 163          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  278 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLC-RMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQI 679
            L DLPE CV++I+    P + C LA +++ F  A  +D VWE  +PP Y +LI +      K L K+E+Y  LC +    D G K +W++K+    C+ ISA  LAI   +  + W  IP  ++RF +VA L ++
Sbjct:   36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQ--SRAFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEV 168          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  290 PESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLI--EEVFGDLKKDLGKREIYARLCRMNS-FDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            PE C++ II   +P + C  A +++ F     +D +WE  LP +Y +LI    VF        K+E+Y  LC     FD   K VWL+K++G  CL +SA  L+I   D+ +YW  IP  ESRF  VA L+ + W
Sbjct:   18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS------KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCW 146          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 51/150 (34.00%), Postives = 72/150 (48.00%), Query Frame = 2
Query:  254 GSAAAKPGLGD---LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEE--VFGDLKKDLGKREIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            G     PG      LPE C++ II    P + C  A +++ F  A  +D VW+  LPP Y +L+    VF        K+E+Y  LC      + G K  WL+K++G  C+ +S+K L IT      YW  I   ESRF  +A L  + W
Sbjct:   50 GGEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS------KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCW 193          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  287 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSF-DGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            LPE C++ +I    P + C +A ++++ + A+ +D VWE  LP  Y +L+ +        L K+EI+  L   +   + G K  W++K++G  C  +SA  L I   D   YW  I   ES+F  VA L+ + W
Sbjct:   35 LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQ----SANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCW 164          
BLAST of FC921341 vs. ExPASy Swiss-Prot
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  287 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLCRMNSFDGGTKKVWLDKSTGGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWW 685
            LPE+CVA I+    P +    A ++  FR A  +DFVWE  LP +Y  +I       +    K+E+Y  LC     D G K   ++K +G +   +S++ L+IT  D R YW+  P  +SRF+    L    W
Sbjct:    2 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIFSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDSRFSEGVQLIMTDW 134          
The following BLAST results are available for this feature:
BLAST of FC921341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
P2A12_ARATH7.471e-5771.94F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P... [more]
P2A11_ARATH2.035e-5459.63F-box protein PP2-A11 OS=Arabidopsis thaliana GN=P... [more]
P2A13_ARATH8.280e-4864.96F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]
P2A15_ARATH2.493e-4455.28F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH2.415e-3954.17F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
PP2B8_ARATH2.125e-1937.04Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
P2B10_ARATH6.183e-1937.78F-box protein PP2-B10 OS=Arabidopsis thaliana GN=P... [more]
FB95_ARATH5.787e-1734.00F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
PP2B1_ARATH1.862e-1532.09F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP... [more]
P2B15_ARATH4.148e-1533.83F-box protein PP2-B15 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC32103H01EF RVDevelopN Citrus clementina cDNA clone C32103H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921341 ID=FC921341; Name=FC921341; organism=Citrus clementina; type=EST; length=686bp
CGGGGGTCCGTGAGACAAGACAACATCTGCAAGTTCCCTCTGAACCTTTT
TGCTATCTCTCTCTCTTTCTTTGAAGGCCTCCCTTTTGATTCTCAGAACT
TTCTAGTTCTCTGCGTTCTTTCTTACTTTCTTTCGTTCTTTCTTTTCTTT
TTCCTCTGTTTTTTGGGGCTTGCTCTGTTTTTTAATTTTGATTTTGAGCT
TGATGGGTGCAAATTTTTCTGCTTTATTTCGGGACCCAAACGGCGCAACA
CCTGGTTCCGCAGCAGCAAAGCCGGGACTGGGTGATTTGCCGGAGAGTTG
TGTGGCTTTGATTATTGGGTCTTTGGATCCGACAGAGATTTGCAAATTGG
CTAGATTGAATAGAGCTTTTCGTGGGGCTTCTTTGGCCGATTTCGTCTGG
GAATCTAAATTGCCTCCTAATTATCGAACTTTGATTGAAGAAGTGTTTGG
TGATTTGAAAAAGGATTTGGGTAAGAGAGAGATTTATGCCAGGCTTTGTC
GAATGAATTCTTTTGATGGTGGCACCAAGAAAGTTTGGCTAGATAAGAGT
ACTGGGGGTGTCTGTCTATCCATTTCGGCCAAGGGGCTGGCGATTACTGG
TATTGATGATCGGAGATATTGGAATCATATTCCAACCGAGGAATCTAGAT
TCACTTCAGTTGCATATCTTCAGCAAATTTGGTGGT
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