FC921353

Overview
NameFC921353
Unique NameFC921353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:138..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_ARATH (Chorismate synthase, chloroplastic OS=Arabidopsis thaliana GN=EMB1144 PE=2 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 1.692e-88
Identity = 163/228 (71.49%), Postives = 188/228 (82.46%), Query Frame = 2
Query:   11 ASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            +SS+ SK+ L + +   S    LP   R+L SP VQI +R++T K  Q++A GS++GT+FRV+TFGESHGGGVGCIIDGCPPRIPL+E+D+Q DLDRRRPGQSRITTPRKETDTC+I SGVSEG+TTGTPIHVFVPNTDQRG DYSEMSVAYRPSHADATYDMKY              ETIGRVAPGA+AKKILKQFAGTEILAYVSQVH+VVLPE++VDH  LTL+
Sbjct:    3 SSSLTSKSILGSTKLGSSS---LPSELRRLSSPAVQISLRTQTRKNFQIQATGSSYGTHFRVSTFGESHGGGVGCIIDGCPPRIPLTESDLQFDLDRRRPGQSRITTPRKETDTCRISSGVSEGMTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGALAKKILKQFAGTEILAYVSQVHHVVLPEELVDHENLTLE 227          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC2_SOLLC (Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum GN=CS2 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.367e-82
Identity = 154/229 (67.25%), Postives = 181/229 (79.04%), Query Frame = 2
Query:    8 MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            MASS+ +K FL AP +    G        +L S N++       PK+L+++AAG+TFG YFRVTTFGESHGGGVGCIIDGCPPR+PLSE+DMQV+LDRRRPGQSRITTPRKETDTCKI SG ++G+TTG+PI V VPNTDQRG+DYSEMS+AYRPSHADATYD KY              ETIGRVA GAVAKKILK ++GTEILAYVSQVHNVVLPED+VD+ ++TL+
Sbjct:    1 MASSMLTKQFLGAPFSSFGSGQQ----PSKLCSSNLRFPTHRSQPKRLEIQAAGNTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSRITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRPSHADATYDFKYGVRSVQGGGRSSARETIGRVAAGAVAKKILKLYSGTEILAYVSQVHNVVLPEDLVDNQIVTLE 225          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_CORSE (Chorismate synthase, chloroplastic OS=Corydalis sempervirens PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.417e-81
Identity = 157/236 (66.53%), Postives = 185/236 (78.39%), Query Frame = 2
Query:    8 MASSVASKTFLAAPR----TDGSLGSLLP--DLRRQLPSPNVQILIRSRT-PKKLQVKAAGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            MASS+++K FL+  R    TDGS  S     DLR QL + +VQI +R +T P KL V+A+GS+FG  F+VTT+GESHGGGVGC+IDGCPPR P+SEAD+Q DLDRRRPGQSRITTPRKETDTCKIYSGV++G TTG+PIH+ VPNTDQRG+DYSEM+ AYRPSHADATYD KY              ETIGRVA GA+AKKILK +AGTE+LAYVSQ H VVLPE +VDH  L+L+
Sbjct:    1 MASSLSTKPFLSGSRRRSTTDGSGWSYFQTSDLR-QLSNQSVQISVRRQTAPLKLVVQASGSSFGKVFQVTTYGESHGGGVGCVIDGCPPRFPISEADIQSDLDRRRPGQSRITTPRKETDTCKIYSGVADGFTTGSPIHISVPNTDQRGNDYSEMAKAYRPSHADATYDFKYGVRSVQGGGRSSARETIGRVAAGALAKKILKAYAGTEVLAYVSQAHKVVLPEGLVDHETLSLE 235          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC1_SOLLC (Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.778e-80
Identity = 154/233 (66.09%), Postives = 178/233 (76.39%), Query Frame = 2
Query:    8 MASSVASKTFLAAPRTDGSLGSLLPDLRRQLPSP----NVQILIRSRTPKKLQVKAAGSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            MAS V +K F+ A  +     S L  L  QLPS     N  +  R    K+L+++AAGSTFG YFRVTTFGESHGGGVGCIIDGCPPR+PLSE+DMQV+LDRRRPGQSRITTPRKETDTCKI SG ++G+TTG+PI V VPNTDQRG+DYSEMS+AYRPSHADATYD KY              ETIGRVA GAVAKKILK ++G E+LAYVSQVH VVLPED++DH  +TL+
Sbjct:    1 MASFVPTKQFVGASSSSDIGSSRLVSL--QLPSKFSSSNFHLPSRPSQLKRLEIQAAGSTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSRITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRPSHADATYDFKYGVRSVQGGGRSSARETIGRVAAGAVAKKILKLYSGAEVLAYVSQVHQVVLPEDLIDHQNVTLE 231          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNY3 (Chorismate synthase OS=Synechocystis sp. (strain PCC 6803) GN=aroC PE=3 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.888e-55
Identity = 107/176 (60.80%), Postives = 127/176 (72.16%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            G+TFG+ FR+TTFGESHGGGVG IIDGCPPR+ +S  ++QVDLDRRRPGQS+ITTPRKE D C+I SGV EG T GTPI + V N D R  DY+EM+V YRPSHADATY+ KY              ETIGRVA GA+AKKIL QF G EI+AYV  + ++   E  VD   +TL+
Sbjct:    2 GNTFGSLFRITTFGESHGGGVGVIIDGCPPRLEISPEEIQVDLDRRRPGQSKITTPRKEADQCEILSGVFEGKTLGTPIAILVRNKDARSQDYNEMAVKYRPSHADATYEAKYGIRNWQGGGRSSARETIGRVAAGAIAKKILAQFNGVEIVAYVKSIQDI---EATVDSNTVTLE 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_CYAP8 (Chorismate synthase OS=Cyanothece sp. (strain PCC 8801) GN=aroC PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.466e-55
Identity = 107/176 (60.80%), Postives = 128/176 (72.73%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            G+TFG  FR+TTFGESHGGGVG +IDGCPPR+ +SE+D+Q DLDRRRPGQS+ITTPR E+DTC+I SGV EG T GTPI + V N DQR  DY EMSV  RPSHADATY+ KY              ETIGRVA GA+AKKILKQ A  EI+ YV ++ ++   E +VD   +TL+
Sbjct:    2 GNTFGHLFRITTFGESHGGGVGVVIDGCPPRLEISESDIQYDLDRRRPGQSKITTPRHESDTCEIISGVFEGKTLGTPIAILVRNKDQRSQDYDEMSVKLRPSHADATYEAKYGIRNWQGGGRSSARETIGRVAAGAIAKKILKQVANVEIIGYVKRIKDL---EGMVDPSTVTLE 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_CYAA5 (Chorismate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=aroC PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.494e-55
Identity = 104/161 (64.60%), Postives = 122/161 (75.78%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNV 649
            G+TFG  FR+TTFGESHGGGVG IIDGCPPR+ LSE+D+Q DLDRRRPGQS+ITTPRKETDTC+I SGV +G T GTPI + V N D R  DY+EMSV +RPSHADATY+ KY              ETIGRVA GA+AKKILKQ A  EI+ YV ++ ++
Sbjct:    2 GNTFGHLFRITTFGESHGGGVGVIIDGCPPRLDLSESDIQGDLDRRRPGQSKITTPRKETDTCEIISGVFQGKTLGTPIAILVRNKDARSQDYNEMSVKFRPSHADATYEAKYGIRNWQGGGRSSARETIGRVAAGAIAKKILKQVANVEIVGYVKRIKDL 162          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_SYNE7 (Chorismate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=aroC PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.176e-55
Identity = 104/176 (59.09%), Postives = 129/176 (73.30%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVDHXMLTLD 694
            GS+FG  FR++TFGESHGGGVG +IDGCPPR+ +SEA++Q +LDRRRPGQS+ITTPRKE D C+I SGV +G T GTPI + V N DQR  DYSEM VAYRPSHADATYD KY              ETIGRVA GA+AKK+L++ AG EI+ YV ++ ++   E  +D   +TL+
Sbjct:    2 GSSFGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKEADQCEILSGVVDGKTLGTPIAIVVRNKDQRSQDYSEMQVAYRPSHADATYDAKYGIRAVAGGGRSSARETIGRVAAGAIAKKLLREIAGVEIVGYVKRIKDL---EGQIDPETVTLE 174          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_CYAP4 (Chorismate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=aroC PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.372e-55
Identity = 104/166 (62.65%), Postives = 123/166 (74.10%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPED 664
            G+TFG  FRVTTFGESHGGGVG +IDGCPP + +S+A++Q +LDRRRPGQSRITTPR+ETDTC+I SGV EG T GTPI + V N D R  DY EM+  YRPSHADATYD KY              ETIGRVA GA+AKKIL+Q AG EI+AYV ++ ++  P D
Sbjct:    2 GNTFGHLFRVTTFGESHGGGVGVVIDGCPPLLEISQAEIQAELDRRRPGQSRITTPRQETDTCEILSGVFEGKTLGTPIAILVRNKDTRPQDYQEMAQVYRPSHADATYDAKYGIRNWQGGGRSSARETIGRVAAGAIAKKILQQVAGVEIIAYVRRIKDLEAPID 167          
BLAST of FC921353 vs. ExPASy Swiss-Prot
Match: AROC_THEEB (Chorismate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=aroC PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.599e-54
Identity = 106/169 (62.72%), Postives = 125/169 (73.96%), Query Frame = 2
Query:  167 GSTFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXXXXXXXXETIGRVAPGAVAKKILKQFAGTEILAYVSQVHNVVLPEDVVD 673
            G+TFG  FRVTTFGESHGGGVG ++DGCPPR+ LSE D+Q +LDRRRPGQSR+TTPR+E+D C+I SGV EG T GTPI + V N D R  DY+EM+  YRPSHADATYD KY              ETIGRVA GA+A+KIL Q AGTEI+AYV +V ++   E VVD
Sbjct:    2 GNTFGHLFRVTTFGESHGGGVGVVVDGCPPRLELSEVDIQKELDRRRPGQSRLTTPRQESDRCEILSGVFEGKTLGTPIAILVRNKDTRPEDYAEMAQVYRPSHADATYDAKYGIRNWQGGGRSSARETIGRVAAGAIARKILTQVAGTEIIAYVKRVKDI---EAVVD 167          
The following BLAST results are available for this feature:
BLAST of FC921353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROC_ARATH1.692e-8871.49Chorismate synthase, chloroplastic OS=Arabidopsis ... [more]
AROC2_SOLLC2.367e-8267.25Chorismate synthase 2, chloroplastic OS=Solanum ly... [more]
AROC_CORSE3.417e-8166.53Chorismate synthase, chloroplastic OS=Corydalis se... [more]
AROC1_SOLLC3.778e-8066.09Chorismate synthase 1, chloroplastic OS=Solanum ly... [more]
AROC_SYNY31.888e-5560.80Chorismate synthase OS=Synechocystis sp. (strain P... [more]
AROC_CYAP82.466e-5560.80Chorismate synthase OS=Cyanothece sp. (strain PCC ... [more]
AROC_CYAA55.494e-5564.60Chorismate synthase OS=Cyanothece sp. (strain ATCC... [more]
AROC_SYNE77.176e-5559.09Chorismate synthase OS=Synechococcus elongatus (st... [more]
AROC_CYAP49.372e-5562.65Chorismate synthase OS=Cyanothece sp. (strain PCC ... [more]
AROC_THEEB1.599e-5462.72Chorismate synthase OS=Thermosynechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionC32104A02EF RVDevelopN Citrus clementina cDNA clone C32104A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921353 ID=FC921353; Name=FC921353; organism=Citrus clementina; type=EST; length=694bp
GATCTCAATGGCTTCTTCTGTTGCATCAAAAACGTTTCTTGCAGCTCCCA
GAACTGATGGGTCGTTGGGTTCCCTTCTGCCGGATCTTCGACGACAACTC
CCATCACCTAACGTCCAAATCTTGATCCGCTCTCGTACCCCAAAGAAGCT
CCAAGTAAAAGCAGCTGGGAGTACATTTGGAACATATTTTCGTGTCACAA
CATTTGGAGAGTCTCATGGAGGTGGTGTTGGTTGTATTATTGATGGTTGC
CCTCCCAGGATCCCTCTTTCAGAAGCTGATATGCAAGTTGACCTTGACAG
AAGGAGGCCAGGCCAGAGCCGAATTACAACCCCTAGAAAGGAGACTGATA
CATGCAAAATATATTCAGGAGTTTCTGAAGGGGTGACCACTGGAACACCC
ATCCATGTATTTGTACCTAATACTGATCAGAGAGGACATGATTACAGTGA
AATGTCAGTAGCTTACAGGCCATCTCATGCAGATGCGACTTATGACATGA
AGTATGGTGTGAGATCAGTACAGGGTGGTGGTAGATCTTCAGTTAGAGAA
ACCATTGGAAGAGTTGCACCAGGAGCTGTTGCAAAGAAAATTCTGAAGCA
ATTTGCAGGAACTGAGATTCTTGCTTATGTCTCTCAAGTGCACAATGTTG
TGCTTCCGGAGGACGTGGTTGATCATGANATGTTGACACTCGAT
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