FC921354

Overview
NameFC921354
Unique NameFC921354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8917 contig Ccv1_Contig8917:229..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921354 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.679e-86
Identity = 153/219 (69.86%), Postives = 178/219 (81.28%), Query Frame = 2
Query:   35 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNI 691
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVV+I
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDI 563          
BLAST of FC921354 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.125e-84
Identity = 145/189 (76.72%), Postives = 165/189 (87.30%), Query Frame = 2
Query:  125 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNI 691
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNI
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNI 560          
BLAST of FC921354 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.470e-84
Identity = 152/201 (75.62%), Postives = 170/201 (84.58%), Query Frame = 2
Query:   92 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNI 691
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD  HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFITKI+RY KVVNI
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNI 565          
BLAST of FC921354 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.115e-26
Identity = 68/187 (36.36%), Postives = 103/187 (55.08%), Query Frame = 2
Query:  149 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT---GRPNVDWCE--SHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFITKITRYEKVVNI 691
            +K+LI+G  GWIG ++ K+ + Q         R ++ +++E +I+ +KP  V +  G T   G   +D+ E     VE ++ N+ G L LA +C+   + L    TGCIFE  +        GF E D PNF GS YS  K   + L+  F+N V  LR+RMPI+ +  NPR+FITKI  Y ++ +I
Sbjct:    1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTHGPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADEK-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILSYSRICSI 185          
The following BLAST results are available for this feature:
BLAST of FC921354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM2_ARATH2.679e-8669.86Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM3_ARATH1.125e-8476.72Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH1.470e-8475.62Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
YL780_MIMIV3.115e-2636.36Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionC32104A03EF RVDevelopN Citrus clementina cDNA clone C32104A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921354 ID=FC921354; Name=FC921354; organism=Citrus clementina; type=EST; length=691bp
GACACACATAGATTCCAATCAATAGTACGAAATTCTAACAGATCCAAATT
CAAATCGAAATCCGATCCAGTCTCATCTCTCCTTTGCATTCACTCACCAT
TACCCAATGGGTTTCCCAGCCAACGGCTCCGACGCCGGCTCCAAGCCGCT
CAAGTTTCTCATCTACGGCCGCACTGGCTGGATCGGGGGCTTGCTCGGCA
AGCTCTGCCAAGCTCAGTCCATTGACTTCACCTACGGCTCCGGCCGCCTC
GAGAACCGCGCCTCCCTCGAAGCCGACATCGCCGCCGTCAAGCCCACCCA
CGTCTTCAACGCGGCCGGGGTGACCGGCAGGCCCAACGTCGACTGGTGCG
AATCGCATAAGGTCGAGACCATACGGACTAATGTCGTCGGCACCCTTACG
CTTGCTGACGTCTGCAGAGACAAAGGTTTGATTCTCATTAATTACGCCAC
CGGCTGCATCTTCGAGTACGATTCCGGTCACCCCCTCGGATCCGGCATCG
GCTTCAAGGAGGAGGATACTCCGAATTTTGTCGGATCTTTCTACTCCAAG
ACTAAGGCCATGGTGGAAGAGTTGCTCAAGAATTTTGAGAATGTCTGTAC
TTTGCGTGTCAGGATGCCGATCTCATCAGATTTATCCAATCCTCGCAACT
TCATCACAAAGATCACTCGATATGAAAAGGTAGTCAACATT
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