FC921368
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 3.106e-54 Identity = 117/186 (62.90%), Postives = 137/186 (73.66%), Query Frame = 2 Query: 74 ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRE 631 ASL+ V+ SL ++PFKGNVKTL+ KP LC LK+Q+ +++V+N+ + G NVRFRL+NLGPQPGS IAAGQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPSGRE Sbjct: 4 ASLIPVS--SLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNVKSSGE----NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRE 179
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2) HSP 1 Score: 200.675 bits (509), Expect = 7.162e-51 Identity = 112/200 (56.00%), Postives = 131/200 (65.50%), Query Frame = 2 Query: 71 MASLLSVTANSLS--------FPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQ-----LTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRE 631 MA+ LS+++N L+ ST FKGNV L P L + L + + Q L V++Q S V RFRL+NLGPQPGS I+AGQG SCGFGMRGQKSRSGPG+ +GFEGGQ LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+KGLINPSGRE Sbjct: 1 MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTA------ATSSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRE 194
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.006e-20 Identity = 57/110 (51.82%), Postives = 68/110 (61.82%), Query Frame = 2 Query: 293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613 +L+NL PQPG+ IAAGQG SCGFGMRGQKSRSG R GFEGGQMPLYRR+PKL+ H L Y VN+ + AG G EV+LE+L G++ Sbjct: 2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIV 103
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 5.006e-20 Identity = 57/110 (51.82%), Postives = 68/110 (61.82%), Query Frame = 2 Query: 293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613 +L+NL PQPG+ IAAGQG SCGFGMRGQKSRSG R GFEGGQMPLYRR+PKL+ H L Y VN+ + AG G EV+LE+L G++ Sbjct: 2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIV 103
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.245e-19 Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 2 Query: 293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613 RL ++ PQPGS IAAGQG SCG GMRGQK+R G G R GFEGGQ PLYRR+PKL+ + P+Y +NL+ + A G EVSLE+L G++ Sbjct: 2 RLEDIRPQPGSTRRRRRLGRGIAAGQGASCGKGMRGQKARKGGGPRPGFEGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIV 104
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_SYNP2 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplO PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19 Identity = 52/112 (46.43%), Postives = 65/112 (58.04%), Query Frame = 2 Query: 293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRG-----------IAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL 595 +L+NL P+ GS IAAGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+ + G LP V L+ + AAG + ++ L+ L Sbjct: 2 KLSNLSPKAGSKKRRRRVGRGIAAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFTIVNPKNFTIVNVGQLTDLPANTEVTLESLMAAGIVTTNDGPLKVL 113
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.103e-18 Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 2 Query: 293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613 +L+ + PQPGS ++AGQG SCG GMRGQKSRSG G R GFEGGQMPLYRR+PKL+ +Y VNL+ + A EV+LE+L K ++ Sbjct: 2 KLHEIAPQPGSTKRRRRVGRGVSAGQGASCGLGMRGQKSRSGTGTRPGFEGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKIL 103
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_CYAP7 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18 Identity = 53/106 (50.00%), Postives = 63/106 (59.43%), Query Frame = 2 Query: 296 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613 L+ L PQ G+ I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+ +Y +N+ + A EV+LETL GLI Sbjct: 3 LHELAPQKGATKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKPGFEGGQMPLYRRIPKLKHFP---LVNRRQYTIINVGQL--ASLDPNSEVTLETLMDAGLI 103
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_PROM0 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplO PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18 Identity = 53/106 (50.00%), Postives = 63/106 (59.43%), Query Frame = 2 Query: 296 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613 LN L GS IAAGQG SCGFGMRGQKSRSG R GFEGGQMPLYRR+PKL+ + +NL+ + F + D V+L++L KKGLI Sbjct: 5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNLDSLVKKGLI 105
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_CYAP8 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18 Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = 2 Query: 293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613 R++ + P+ GS I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+ H L PK Y +N+ +E+ EV+LE+L ++G+I Sbjct: 2 RIHEVTPKEGSTKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRIPKLK------HFPLVNPKHYTIINVGKLES--LEPNTEVTLESLMEQGII 103 The following BLAST results are available for this feature:
BLAST of FC921368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 336
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921368 ID=FC921368; Name=FC921368; organism=Citrus clementina; type=EST; length=749bpback to top |