FC921368

Overview
NameFC921368
Unique NameFC921368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14295 contig Ccv1_Contig14295:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.106e-54
Identity = 117/186 (62.90%), Postives = 137/186 (73.66%), Query Frame = 2
Query:   74 ASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRE 631
            ASL+ V+  SL   ++PFKGNVKTL+ KP   LC  LK+Q+     +++V+N+        + G     NVRFRL+NLGPQPGS          IAAGQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPSGRE
Sbjct:    4 ASLIPVS--SLPSLASPFKGNVKTLVAKP--CLCPCLKIQRTKL--RVSVVNKAASAYNVKSSGE----NVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRE 179          
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 7.162e-51
Identity = 112/200 (56.00%), Postives = 131/200 (65.50%), Query Frame = 2
Query:   71 MASLLSVTANSLS--------FPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQ-----LTVLNQXXXXXXXXTVGSGPVTNVRFRLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRE 631
            MA+ LS+++N L+          ST FKGNV  L   P   L + L    + +  Q     L V++Q           S  V   RFRL+NLGPQPGS          I+AGQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+KGLINPSGRE
Sbjct:    1 MATPLSISSNPLTSRHCYRLHLSSTSFKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTA------ATSSAVVAPERFRLDNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRE 194          
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.006e-20
Identity = 57/110 (51.82%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIV 103          
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.006e-20
Identity = 57/110 (51.82%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613
            +L+NL PQPG+          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++
Sbjct:    2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIV 103          
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_SYNJA (50S ribosomal protein L15 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplO PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.245e-19
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 2
Query:  293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613
            RL ++ PQPGS          IAAGQG SCG GMRGQK+R G G R GFEGGQ PLYRR+PKL+      +   P+Y  +NL+ +  A    G EVSLE+L   G++
Sbjct:    2 RLEDIRPQPGSTRRRRRLGRGIAAGQGASCGKGMRGQKARKGGGPRPGFEGGQTPLYRRLPKLKHFP--RYVRRPQYTLINLRAL--AKLPAGSEVSLESLMDLGIV 104          
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_SYNP2 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplO PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19
Identity = 52/112 (46.43%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRG-----------IAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETL 595
            +L+NL P+ GS          IAAGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+            +  G    LP    V L+ + AAG +  ++  L+ L
Sbjct:    2 KLSNLSPKAGSKKRRRRVGRGIAAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFTIVNPKNFTIVNVGQLTDLPANTEVTLESLMAAGIVTTNDGPLKVL 113          
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.103e-18
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613
            +L+ + PQPGS          ++AGQG SCG GMRGQKSRSG G R GFEGGQMPLYRR+PKL+           +Y  VNL+ +  A      EV+LE+L K  ++
Sbjct:    2 KLHEIAPQPGSTKRRRRVGRGVSAGQGASCGLGMRGQKSRSGTGTRPGFEGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKIL 103          
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_CYAP7 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 53/106 (50.00%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  296 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613
            L+ L PQ G+          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+           +Y  +N+  +  A      EV+LETL   GLI
Sbjct:    3 LHELAPQKGATKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKPGFEGGQMPLYRRIPKLKHFP---LVNRRQYTIINVGQL--ASLDPNSEVTLETLMDAGLI 103          
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_PROM0 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplO PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18
Identity = 53/106 (50.00%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  296 LNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613
            LN L    GS          IAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V+L++L KKGLI
Sbjct:    5 LNTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNLDSLVKKGLI 105          
BLAST of FC921368 vs. ExPASy Swiss-Prot
Match: RL15_CYAP8 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18
Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  293 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLI 613
            R++ + P+ GS          I+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+      H  L  PK Y  +N+  +E+       EV+LE+L ++G+I
Sbjct:    2 RIHEVTPKEGSTKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRIPKLK------HFPLVNPKHYTIINVGKLES--LEPNTEVTLESLMEQGII 103          
The following BLAST results are available for this feature:
BLAST of FC921368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
RK15_PEA3.106e-5462.9050S ribosomal protein L15, chloroplastic (Fragment... [more]
RK15_ARATH7.162e-5156.0050S ribosomal protein L15, chloroplastic OS=Arabid... [more]
RL15_SYNP65.006e-2051.8250S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNE75.006e-2051.8250S ribosomal protein L15 OS=Synechococcus elongat... [more]
RL15_SYNJA3.245e-1949.5350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNP27.228e-1946.4350S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_MICAN2.103e-1847.6650S ribosomal protein L15 OS=Microcystis aeruginos... [more]
RL15_CYAP72.747e-1850.0050S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_PROM06.119e-1850.0050S ribosomal protein L15 OS=Prochlorococcus marin... [more]
RL15_CYAP86.119e-1849.0950S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32104B05EF RVDevelopN Citrus clementina cDNA clone C32104B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921368 ID=FC921368; Name=FC921368; organism=Citrus clementina; type=EST; length=749bp
GGTTGAATCAAACAACAAATAATGGCTGAAGCCTGAAGCATAAAATTTCA
TCATCGTAATCATCTCCATCATGGCATCTCTTCTCTCAGTCACTGCAAAT
TCACTAAGCTTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAAT
GCCAAAACCCCCATCAAGCCTTTGCGTCCCCCTCAAAGTCCAACAAAGAA
ATAAACCACCCCAGCTCACTGTCTTAAACCAAGCTGCCTCGGCTTCTGCT
TCAGCAACTGTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAAA
TAACCTGGGCCCACAACCGGGTTCGAGAAAGAGAGGGAAGAGAAAGGGGA
GAGGAATAGCAGCTGGGCAAGGTAACAGCTGTGGGTTTGGAATGAGAGGT
CAGAAATCGAGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTCA
AATGCCTCTTTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTA
TGCATGCTGGGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAA
GCAGCTGGTTTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAA
GAAGGGCTTGATCAATCCCTCAGGAAGAGAAGGAAACTGCCTTTAAAGAT
TCTTGGTGATGGAGAATTAAGCAGAAGCTGAAACTCAAGCTCGTGCCTCT
CTACATCAGCAAAGAGAAGCTTGAGCTGCAGCTGTACCTCACTGTCTAC
back to top