FC921373

Overview
NameFC921373
Unique NameFC921373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13158 contig Ccv1_Contig13158:15..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RCL1_ARATH (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 1.359e-82
Identity = 136/191 (71.20%), Postives = 171/191 (89.53%), Query Frame = 3
Query:   75 KRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTVPIVDRLTAVRWLDEGMVKRIRGVSFS 647
            K++KGSQS RQRL+LSTL+STP+ ID+IRAD+T+PGLRPHE++LLRLLE + DD VV+INETGT L+YKPG ++GG+NLVH C +SRSIGY+LEPL+L+GLF KKP+SIRL+GITNDP+D SVDTFRSTTL ++KRFGVP+E LELKIE+RG  P+GGGEV+LTVP +  L+AV W++EGMVK+IRG +FS
Sbjct:    5 KKMKGSQSFRQRLLLSTLSSTPISIDEIRADETIPGLRPHEVNLLRLLEIVTDDAVVDINETGTRLKYKPGTIVGGKNLVHSCSLSRSIGYYLEPLLLLGLFGKKPLSIRLKGITNDPRDASVDTFRSTTLNIIKRFGVPAEDLELKIEARGVAPNGGGEVLLTVPNIKTLSAVHWVEEGMVKKIRGTTFS 195          

HSP 2 Score: 36.965 bits (84), Expect = 1.359e-82
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  670 NSMIHAARGIFNRLLPDXHIFTD 738
            +SM  AARGIFN LLPD HIF D
Sbjct:  204 HSMRFAARGIFNNLLPDVHIFQD 226          
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RCL1_HUMAN (RNA 3'-terminal phosphate cyclase-like protein OS=Homo sapiens GN=RCL1 PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 6.825e-51
Identity = 98/187 (52.41%), Postives = 128/187 (68.45%), Query Frame = 3
Query:   87 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTVPIVDRLTAVRWLDEGMVKRIRGVSFS 647
            G   LRQRLVLSTL+  PV I  IRA D  PGLR  E S +RLL++I +   +EIN+TGT L Y+PG++ GG ++ HDC V R IGY+LE L+ +  F K P+ I LRG+TND  DPSVD  ++T LPLLK+FG+  E  ELKI  RG PP GGGEV+ + P+   L  ++  D G +KRIRG+++S
Sbjct:   12 GCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGG-SVEHDCSVLRGIGYYLESLLCLAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKIVRRGMPPGGGGEVVFSCPVRKVLKPIQLTDPGKIKRIRGMAYS 197          

HSP 2 Score: 29.261 bits (64), Expect = 6.825e-51
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  670 NSMIHAARGIFNRLLPDXHIFTD 738
            N ++ +AR I N+ +PD +I+TD
Sbjct:  206 NRIVDSARSILNKFIPDIYIYTD 228          
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RCL1_MOUSE (RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus GN=Rcl1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.160e-50
Identity = 99/187 (52.94%), Postives = 128/187 (68.45%), Query Frame = 3
Query:   87 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTVPIVDRLTAVRWLDEGMVKRIRGVSFS 647
            G   LRQRLVLSTL+  PV I  IRA D  PGLR  E S +RLL++I +   +EIN+TGT L Y+PG++ GG ++ HDC V R IGY+LE L+ +  F K P+ I LRG+TND  DPSVD  ++T LPLLK+FG+  E  ELKI  RG PP GGGEV+ + P+   L  V+  D G +KRIRG+++S
Sbjct:   12 GCNFLRQRLVLSTLSGRPVKIRRIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGG-SVEHDCSVLRGIGYYLEALLCLAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKILRRGMPPGGGGEVLFSCPVRKVLKPVQLTDPGKIKRIRGMAYS 197          

HSP 2 Score: 29.261 bits (64), Expect = 1.160e-50
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  670 NSMIHAARGIFNRLLPDXHIFTD 738
            N ++ +AR I N+ +PD +I+TD
Sbjct:  206 NRIVDSARSILNKFIPDIYIYTD 228          
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RCL1_BOVIN (RNA 3'-terminal phosphate cyclase-like protein OS=Bos taurus GN=RCL1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.160e-50
Identity = 96/187 (51.34%), Postives = 128/187 (68.45%), Query Frame = 3
Query:   87 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTVPIVDRLTAVRWLDEGMVKRIRGVSFS 647
            G   LRQRLVLSTL+  PV I  IRA D  PGLR  E S +RLL+++ +   +EIN+TGT L Y+PG++ GG ++ HDC V R IGY+LE L+ +  F K P+ I LRG+TND  DPSVD  ++T LPLLK+FG+  E  ELK+  RG PP GGGEV  + P+   L  ++ +D G +KRIRG+++S
Sbjct:   12 GCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKVTNGSRIEINQTGTTLYYQPGLLYGG-SMEHDCSVLRGIGYYLESLLCLAPFMKHPLRIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKVVRRGMPPGGGGEVFFSCPVRKVLKPIQLIDPGKIKRIRGMAYS 197          

HSP 2 Score: 29.261 bits (64), Expect = 1.160e-50
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  670 NSMIHAARGIFNRLLPDXHIFTD 738
            N ++ +AR I N+ +PD +I+TD
Sbjct:  206 NRIVDSARSILNKFIPDIYIYTD 228          
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RCL1_DICDI (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Dictyostelium discoideum GN=rcl1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.253e-49
Identity = 91/190 (47.89%), Postives = 136/190 (71.58%), Query Frame = 3
Query:   78 RLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTVPIVDRLTAVRWLDEGMVKRIRGVSFS 647
            + +GS   RQR++ STL+   + I +IR +D  PGLR +E S LRL+++I +   +EIN TGT++ Y PGI++GG+ + H+CG  R IGYF+E LI +G FAK P+ I L GITN+  D ++DT R+TTLP++++FG+  EGL +KI  RG+PP+GGG V    PIV  L A++ +DEG ++RIRG++++
Sbjct:    3 KFQGSTHFRQRIICSTLSGKAIRITNIRDEDEKPGLRDYEASFLRLVDKITNGSKIEINSTGTQITYIPGIIIGGKGITHECGTVRGIGYFVEALICLGPFAKAPLDITLNGITNNDIDLTIDTIRTTTLPIIRKFGI-EEGLIIKIIKRGAPPNGGGSVNFKCPIVPHLKAIQLIDEGKIRRIRGIAYA 191          
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RCL1_DROME (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Drosophila melanogaster GN=Rtc1 PE=2 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 2.965e-45
Identity = 91/189 (48.15%), Postives = 126/189 (66.67%), Query Frame = 3
Query:   84 KGSQSLRQRLVLSTLASTPVLIDDIRADD-TMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTVPIVDRLTAVRWLDEGMVKRIRGVSFS 647
            +GS  L+QRL+L+ L+  PV I  IR++D T PGLR +EISL+RLL++I +   +E+N  GT + + PG++ GG+ L HDC V R IGY+L+ LI +G F K P+   LRG+TN    PSVD  +   L LLKRF +  EGLELK+  RG  P GGGE+I   P+   L A+++  +GMVKRIRG  ++
Sbjct:   14 RGSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPAGTSVMFSPGLLHGGQ-LNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALSLLKRFLLVDEGLELKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQSQGMVKRIRGTVYA 201          

HSP 2 Score: 26.5646 bits (57), Expect = 2.965e-45
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  670 NSMIHAARGIFNRLLPDXHIFTD 738
            N  + AA+G   + LPD +I+TD
Sbjct:  210 NRTVEAAKGCMLKFLPDVYIYTD 232          
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RCL1_SCHPO (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Schizosaccharomyces pombe GN=SPAC12G12.06c PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.575e-43
Identity = 90/193 (46.63%), Postives = 131/193 (67.88%), Query Frame = 3
Query:   75 KRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLL-KRFGVPSEGLELKIESRGSPPDGGGEVILTVPIV-DRLTAVRWLDEGMVKRIRGVSFS 647
            KR KG + L  RLVL+TL+ TP+ ++ I  D+  PG++ +++S LRLLE++ +  V+EI+ TGT   Y+PG ++GGR +VHDC  ++ IGYFLEP++++ LFAK P S+ L G+T+  +D  VD  R++ LP L KRF V  E LEL+I  RGS P GGGEV    P++ + L  +R  + G V RIRG++ S
Sbjct:    7 KRFKGCEYLTHRLVLATLSGTPIRVEGIYPDEADPGVKDYQVSFLRLLEKLTNGSVIEISYTGTSFIYRPGNIIGGR-VVHDCPTTKGIGYFLEPILILCLFAKTPTSLTLTGVTSSNEDIGVDVLRTSVLPSLQKRFQVGDE-LELRILKRGSAPGGGGEVNFLCPVIKESLPPIRLSEFGRVFRIRGIASS 197          

HSP 2 Score: 29.261 bits (64), Expect = 1.575e-43
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  670 NSMIHAARGIFNRLLPDXHIFTD 738
            N ++ +ARG+ N  +PD  I+TD
Sbjct:  206 NRLVESARGVLNPFIPDVFIYTD 228          
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RCL1_CAEEL (Probable RNA 3'-terminal phosphate cyclase-like protein OS=Caenorhabditis elegans GN=ZK1127.5 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.035e-35
Identity = 81/195 (41.54%), Postives = 121/195 (62.05%), Query Frame = 3
Query:   87 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGR-NLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTVPIVDRLTAVRWLDEGMVKRIRGVSFSPECLLSL 668
            G    R RL  S L+  P+ I +IR +D  PG+R  E  L+ LLE++ +   VEI+ TGT++ ++PG++ GG  NL  DCG  R I YFLEPL+L+  F K P+ I+L+G+TN P + SVD  +++ L +  +F +  E L++KI++RG  P+GGG V+ T PIV  L  V+    G V +IRG ++  +   SL
Sbjct:   10 GCNFFRIRLAYSILSGRPIRIINIRKNDDRPGIRDFESKLIGLLEKVTNGTKVEISRTGTQVIFRPGMITGGVVNL--DCGTERCISYFLEPLLLLSPFCKVPMVIKLKGVTNAPGEISVDGMKASWLKVYNKFVLNDEKLDIKIQARGLKPEGGGVVVFTAPIVKTLRPVKRQQVGKVCKIRGQAYVTKVTPSL 202          
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RCL1_YEAST (RNA 3'-terminal phosphate cyclase-like protein OS=Saccharomyces cerevisiae GN=RCL1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.955e-34
Identity = 77/200 (38.50%), Postives = 123/200 (61.50%), Query Frame = 3
Query:   72 YKRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTV-PIVDRLTAVRWLDEGMVKRIRGVSFSPECLLSL 668
            Y   +GSQ+ R R+VL+TL+  P+ I+ IR+ D  PGL+ +E+S LRL+E + +  V+EI+ TGT + Y+PGI++GG +  H C  S+ +GYF+EP++ +  F+KK  SI  +GIT    D  ++  +   +P++++FGV      L    RGSPP GGGEV L V  ++ +   +  +D  ++  I GV++S     SL
Sbjct:    8 YTTFQGSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGTTVIYRPGIIVGGAS-THICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHNDAGIEAIKWGLMPVMEKFGV--RECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHEIDRPIISSITGVAYSTRVSPSL 204          
BLAST of FC921373 vs. ExPASy Swiss-Prot
Match: RTCA_IGNH4 (Probable RNA 3'-terminal phosphate cyclase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rtcA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18
Identity = 64/185 (34.59%), Postives = 92/185 (49.73%), Query Frame = 3
Query:   87 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTVPIVDRLTAVRWLDEGMVKRIRGVS 641
            G Q LR  + LS +   PV I +IRA    PGLR   +  ++ L  + D  V  +    TE+ + P  +  G     D G + S+   L+ +    LFA   + ++LRG T+ P  P VD  R    PLL+RFG  +   EL ++ RG  P GGGEV      VD LT    ++ G V ++RG+S
Sbjct:   12 GGQILRTSVALSAVTLKPVRIFNIRAKRKNPGLRRQHMVAVKALAEMTDAEVRGLELGSTEIVFIPKTLKAG-TFRFDIGTAGSVSLVLQAVTPAALFAPGEVRVQLRGGTDVPMSPPVDYLRFVFYPLLERFGAKT---ELVLKRRGHYPKGGGEVEFASRPVDSLTQWGEVERGEVLKVRGLS 192          
The following BLAST results are available for this feature:
BLAST of FC921373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RCL1_ARATH1.359e-8271.20Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RCL1_HUMAN6.825e-5152.41RNA 3'-terminal phosphate cyclase-like protein OS=... [more]
RCL1_MOUSE1.160e-5052.94RNA 3'-terminal phosphate cyclase-like protein OS=... [more]
RCL1_BOVIN1.160e-5051.34RNA 3'-terminal phosphate cyclase-like protein OS=... [more]
RCL1_DICDI2.253e-4947.89Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RCL1_DROME2.965e-4548.15Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RCL1_SCHPO1.575e-4346.63Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RCL1_CAEEL7.035e-3541.54Probable RNA 3'-terminal phosphate cyclase-like pr... [more]
RCL1_YEAST5.955e-3438.50RNA 3'-terminal phosphate cyclase-like protein OS=... [more]
RTCA_IGNH42.686e-1834.59Probable RNA 3'-terminal phosphate cyclase OS=Igni... [more]

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Properties
Property NameValue
Genbank descriptionC32104B10EF RVDevelopN Citrus clementina cDNA clone C32104B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921373 ID=FC921373; Name=FC921373; organism=Citrus clementina; type=EST; length=740bp
GACGGGTTTAGGGTTTAGCAAAGAAACTGCTTTTGGCAATCGAGCAAAGC
AAAATGGGGAAGAAGACATCGTATAAGAGACTGAAGGGAAGCCAGAGCCT
GAGGCAGAGACTGGTATTGTCTACGCTCGCCTCCACTCCTGTTCTCATAG
ACGACATCCGCGCCGACGACACGATGCCCGGTCTCCGTCCCCACGAGATT
TCCCTTCTTCGCCTCCTCGAAAGAATCTGCGATGACTGCGTCGTCGAAAT
TAACGAAACTGGCACGGAATTGGAGTACAAGCCGGGAATAGTGATGGGAG
GAAGGAACTTAGTGCACGACTGCGGCGTTAGCCGGTCTATTGGGTATTTC
TTGGAGCCACTGATTCTTGTTGGATTGTTTGCTAAGAAACCCATTAGCAT
AAGGCTAAGAGGAATTACAAATGATCCTAAGGATCCAAGTGTGGATACTT
TCCGTTCTACTACTTTACCCTTGTTAAAGAGGTTTGGAGTTCCTTCTGAA
GGATTGGAATTGAAGATAGAGAGCCGTGGTTCGCCACCTGATGGTGGAGG
TGAAGTTATTTTGACAGTCCCAATTGTCGATAGGTTAACGGCAGTTCGCT
GGCTCGATGAGGGAATGGTTAAGAGGATTAGAGGTGTTTCCTTTTCACCA
GAGTGTCTTCTCAGTTTGAAATAGTATGATTCATGCTGCTCGTGGAATCT
TTAATCGCCTGCTTCCCGATGNTCACATCTTTACTGATCA
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