FC921377

Overview
NameFC921377
Unique NameFC921377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig344 contig Ccv1_Contig344:251..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921377 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.536e-34
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 3
Query:  339 LMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGRSSKTNMVDYLSKKRLYARLCSPSPFDGGNKEMWLX*NTGGLCVSISSR 623
            +  LDPPEIC+LARLNR FR ASSADFIWESKLP+NY+ I  KV    + T ++    KK LYA+L  P+ FD G KE+W+  NTG LC+SISS+
Sbjct:   37 MTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLI----KKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSK 127          

HSP 2 Score: 38.5058 bits (88), Expect = 4.536e-34
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  620 QALAITGIDDRRYWTHISTED 682
            +AL ITGIDDRRYW+HI T++
Sbjct:  127 KALRITGIDDRRYWSHIPTDE 147          

HSP 3 Score: 34.2686 bits (77), Expect = 4.536e-34
Identity = 17/36 (47.22%), Postives = 25/36 (69.44%), Query Frame = 1
Query:  235 MGANVSGIVAD-SNGDELSSLRPRLSDMPESCVALV 339
            MGAN+SG   +    D++ S + RL D+PE+CVAL+
Sbjct:    1 MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALI 36          
BLAST of FC921377 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.695e-26
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  339 LMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGRSSKTNMVDYLSKKRLYARLCSPSPFDGGNKEMWLX*NTGGLCVSISSR 623
            L +LDP EIC+ ++LN AF GAS ADF+WESKLP +Y+ I++K+LG     +  D L K+ ++  L   + FD GNK+ W+   TGGLC+  S++
Sbjct:   38 LQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILG-----SFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAK 127          

HSP 2 Score: 37.7354 bits (86), Expect = 6.695e-26
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  620 QALAITGIDDRRYWTHISTED 682
            + L+ITGIDDRRYW+HI ++D
Sbjct:  127 KGLSITGIDDRRYWSHIPSDD 147          

HSP 3 Score: 28.4906 bits (62), Expect = 6.695e-26
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  292 LRPRLSDMPESCVALV 339
            L+P L D+PESCVAL+
Sbjct:   22 LQPGLGDLPESCVALI 37          
BLAST of FC921377 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.462e-25
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  345 HLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGRSSKTNMVDYLSKKRLYARLCSPSPFDGGNKEMWLX*NTGGLCVSISSR 623
            +LDP EIC+ ++LNRAFRGAS AD +WESKLP NY+ +++K+LG        + L K+ LYA L   + FD   K++W+   T G+C+SIS++
Sbjct:   42 NLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILG-----GFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAK 129          

HSP 2 Score: 37.7354 bits (86), Expect = 1.462e-25
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  620 QALAITGIDDRRYWTHISTED 682
            + L+ITGIDDRRYW+HI T++
Sbjct:  129 KGLSITGIDDRRYWSHIPTDE 149          

HSP 3 Score: 26.9498 bits (58), Expect = 1.462e-25
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  292 LRPRLSDMPESCVALV 339
            L+P L D+PE+CVA++
Sbjct:   24 LKPGLGDLPEACVAII 39          
BLAST of FC921377 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.191e-25
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  342 MHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGRSSKTNMVDYLSKKRLYARLCSPSPFDGGNKEMWLX*NTGGLCVSISSR 623
            M+L PPEIC LA LNR+FRGA+S+D +WE KLP NYQ ++D +            LSKK ++A L  P PFD  NKE+W+   TG +C++IS+R
Sbjct:   34 MYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLL-----PPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISAR 122          

HSP 2 Score: 32.3426 bits (72), Expect = 3.191e-25
Identity = 12/21 (57.14%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  620 QALAITGIDDRRYWTHISTED 682
            + ++ITGI+DRRYW  I TE+
Sbjct:  122 RGMSITGIEDRRYWNWIPTEE 142          

HSP 3 Score: 29.6462 bits (65), Expect = 3.191e-25
Identity = 16/42 (38.10%), Postives = 27/42 (64.29%), Query Frame = 1
Query:  235 MGANVSGIVADSNGDELSSLRPRLSDMPESCVALV*CIWTHL 360
            MG+++S +   +NG    ++ P L D+PESCVA   C++ +L
Sbjct:    1 MGSSLSNLNDGTNG---LAMGPGLGDIPESCVA---CVFMYL 36          
BLAST of FC921377 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.510e-24
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  342 MHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGRSSKTNMVDYL--SKKRLYARLCSPSPFDGGNKEMWLX*NTGGLCVSISSR 623
            M+++PPEIC LAR+N++F  AS +D +WE KLPSNY+F+V ++L    +  + D L   KK +YARLC P+ FD G KE WL   +G + ++IS +
Sbjct:   34 MYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPK 129          

HSP 2 Score: 38.1206 bits (87), Expect = 1.510e-24
Identity = 17/28 (60.71%), Postives = 23/28 (82.14%), Query Frame = 2
Query:  620 QALAITGIDDRRYWTHISTED--LGSIS 697
            +A+ ITGIDDRRYW HIS+++   GSI+
Sbjct:  129 KAMKITGIDDRRYWEHISSDESRFGSIT 156          
The following BLAST results are available for this feature:
BLAST of FC921377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
P2A13_ARATH4.536e-3458.95F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]
P2A11_ARATH6.695e-2646.32F-box protein PP2-A11 OS=Arabidopsis thaliana GN=P... [more]
P2A12_ARATH1.462e-2547.31F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P... [more]
P2A15_ARATH3.191e-2550.00F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH1.510e-2446.88F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
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Properties
Property NameValue
Genbank descriptionC32104C03EF RVDevelopN Citrus clementina cDNA clone C32104C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921377 ID=FC921377; Name=FC921377; organism=Citrus clementina; type=EST; length=707bp
GGATCTCAATATATCTCCAGCCAGCTTTCTGGTACAGATTCGGCATACTC
CTACACTAATGTAGTCGTAATGTCCCGTCGGACTTAAATCTCTTTTCTCT
GACTTAAAGTTGTCCGAGTCTACGTGTCTGCTTATTCAATCCAAGTTGGG
TCGATTAATGAGTAAGAAGACTCAACAACAAACCCCATTCATTGAAAAAT
CAGATTTTGGGATCTGTCTGGGTTGAGAGGTTTAATGGGAGCTAATGTGT
CTGGTATTGTAGCGGACAGCAATGGAGATGAATTGTCTTCATTGAGGCCG
AGATTGAGCGACATGCCAGAGAGCTGCGTGGCATTGGTTTGATGCATTTG
GACCCACCTGAGATCTGCAAACTGGCTCGCTTGAATCGGGCTTTTCGGGG
AGCTTCTTCAGCTGATTTTATATGGGAATCCAAATTGCCTTCCAATTATC
AGTTCATTGTTGACAAAGTTTTGGGTAGAAGTAGTAAAACAAATATGGTT
GATTATTTGAGTAAGAAACGTCTTTATGCCAGACTTTGTAGTCCCAGTCC
CTTTGATGGTGGCAATAAGGAGATGTGGCTGGANTAAAATACTGGTGGCC
TCTGTGTGTCTATTTCTTCCAGGCTTTAGCCATCACCGGGATTGATGATC
GGAGATACTGGACTCACATTTCAACTGAGGATCTAGGTTCCATCAGTGGC
GTATCTT
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