FC921379

Overview
NameFC921379
Unique NameFC921379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14297 contig Ccv1_Contig14297:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.804e-24
Identity = 66/162 (40.74%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  230 HMDPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGETKICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTKSTTIFQNYTILQVPKPMVA---PQMVACHIMPYPYAIFYCH 706
            H DP+  +FF  KDL  G+TM ++F     +A  + LPR EAD++PFS +++P +L  FS    S  A  +  TL  CE PP +GE K CATSL+SM+DF   + G     +  ST  + K  +  Q YT+  V +        Q+VACH  PY YA+F CH
Sbjct:  205 HDDPNVALFFLEKDLHPGKTMAVHFTAT--TAGEKFLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGTS-HVRAAST-VVGKEGSPEQEYTVTAVKRAAAGGDQDQLVACHAEPYAYAVFACH 362          
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  236 DPSTMVFFTLKDLKIGETM--PIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGETKICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTK---STTIFQNYTILQVPKPMVAPQMVACHIMPYPYAIFYCH 706
            DP   +FF  K+L+ G+ +   ++F     +   + LPR +ADSIPFS K+LP +L  F     S  A  +  TL  CE+P  +GE K CATSL+S++DFV  +FG        ST  L+K   S+++ Q+YT+  V +     Q++ACH   YPYA+F CH
Sbjct:  357 DPDMALFFLEKNLQQGKKINNALHFANLLATTNSKFLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFGAS-DVDAASTVVLSKAVESSSLAQDYTVSGVRRMAGTGQLIACHPESYPYAVFMCH 517          
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23
Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  242 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGETKICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTKSTTIFQNYTILQVPKPMVAPQMVACHIMPYPYAIFYCHS 709
            +T VFF  + +++G  +P +F    P+A    LPR+ ADS+PF+   LP +L  F  + DS    ++E TL  CE P I GE+K CATSL+++++   G  G      V ST  L ++    Q YT++ V      P  VACH   YPY ++ CH+
Sbjct:  138 TTTVFFHEEAVRVGRRLPFHFPPATPAALG-FLPRQVADSVPFTTAALPGILATFGIASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVERAMGVLGTRDIRPVTST--LPRAGAPLQTYTVVAVQPVEGGPVFVACHDEAYPYTVYRCHT 290          
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 64/159 (40.25%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  236 DPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGETKICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTKSTTIFQNYTILQV-PKPMVAPQMVACHIMPYPYAIFYCHS 709
            D    VFF  KDL  G  M ++F +    A    LPR  ADS+PF+ ++LP +L   S    SP A A+  TL  CE  P  GE K CATSL+SM++F   + G       +ST+      T  Q Y +  V P P+    MVACH M Y YA+F CH+
Sbjct:   22 DTVNNVFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRADSVPFASEKLPEILSQLSVPAGSPAADAMRSTLAECEAAPQAGEAKRCATSLESMVEFAASSLGTR-DVHAVSTEVDRAGPTPRQAYRVEAVRPVPVSGGDMVACHGMAYAYAVFGCHT 177          
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  242 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGETKICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTKSTTIFQNYTILQVPKPMVAPQMVACHIMPYPYAIFYCHS 709
            +T VFF  + +++G+ +P  F    P+A    LPR+ ADS+PF+   LP +L  F  + DS    ++E TL  CE P I GE+K CATSL+++++      G      V ST  L ++    Q YT+  V      P  VACH   YPY ++ CH+
Sbjct:  165 TTTVFFHEEAVRVGKRLPFRFPPATPAALG-FLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTST--LPRAGAPLQTYTVRSVRPVEGGPVFVACHDEAYPYTVYRCHT 317          
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 60/158 (37.97%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  236 DPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGETKICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTK-STTIFQNYTILQVPKPMVAPQMVACHIMPYPYAIFYCH 706
            DP+  +FF   +L+  +++ ++F      A  + LPR EAD++PFS K L  +L  F     S  A  V+ TL  CE+P  +GE K CATSL+SM+DFV  + G     +  ST  + K   T  Q YT+    +     Q++ACH   YPYA+F CH
Sbjct:  103 DPTMGLFFLETNLQSSKSIKLHFANM--MAGTKFLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFVASSLGTR-DIKAASTFLVGKDGDTPAQEYTVTGARRMAETGQLIACHPESYPYAVFMCH 257          
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 59/164 (35.98%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  230 HMDPSTMVFFTLKDLKIGETMPIYFRKRDPSAYPQA-LPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGETKICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTKSTTIFQNYTILQV-PKPMVAPQMVACHIMPYPYAIFYCHSQM 715
            H DP+  +FF  KDL  G+ M + F   D      A LPR EA+++PF  ++    L+ FS    S  A+ ++ T+  CE   + GE K CATSL+SM+DF     G +   + +ST+ + K     Q Y I     K +   + V CH   YP+A+FYCH  M
Sbjct:  168 HDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLG-KYHVRAVSTE-VAKKNAPMQKYKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKAM 329          
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 56/156 (35.90%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  242 STMVFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGETKICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTKSTTIFQNYTILQVPKPMVAPQMVACHIMPYPYAIFYCHS 709
            +T VFF  + +++GE +P YF     SA    LPR  ADSIPF+   LP +L  F  + D+  A  +  TL  CE P + GE+K CATSL+++++      G      + ST  L +     Q Y +  V  P+     VACH   YPY ++ CH+
Sbjct:  186 TTTVFFHEEAVRVGERLPFYFPAATTSALG-FLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALAST--LPRGGAPLQAYAVRAV-LPVEGAGFVACHDQAYPYTVYRCHT 337          
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: BURP1_ORYSJ (BURP domain-containing protein 1 OS=Oryza sativa subsp. japonica GN=BURP1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18
Identity = 61/158 (38.61%), Postives = 83/158 (52.53%), Query Frame = 2
Query:  251 VFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGET----KICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTKSTTIFQNYTILQVPKPMVAP--QMVACHIMPYPYAIFYCH 706
            VFF  KDL  G  M ++F +    A    LPR  A+S+PF+ ++LP +L   S    SP A A+  TL  CE   + GET      CATSL+SM++FV  + G      V +    T + T  Q Y + +  +P+  P   MVACH MPY YA+F  H
Sbjct:   64 VFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRAESVPFASERLPEILSQLSIPAVSPTADAMWSTLAECEAARLAGETTKHKHYCATSLESMVEFVASSLGTRDVHAVSTEVISTLTPTPRQAYRV-EAVRPVAVPGGDMVACHGMPYAYAVFGLH 218          
BLAST of FC921379 vs. ExPASy Swiss-Prot
Match: BURP2_ORYSJ (BURP domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=BURP2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 62/159 (38.99%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  251 VFFTLKDLKIGETMPIYFRKRDPSAYPQALPREEADSIPFSLKQLPYLLQFFSFSDDSPLAKAVEGTLNHCEVPPIEGET-----KICATSLDSMLDFVHGTFGLEIKFQVLSTKFLTKS-TTIFQNYTILQV-PKPMVAPQMVACHIMPYPYAIFYCH 706
            VFF  KDL  G  M ++F +    A    LPR  ADS+PF+ ++LP +L   S    SP A A+  TL  CE   I  ET       CATSL+SM++ V  + G       +ST+ + ++  T  Q Y +  V P P+    MVACH MPY YA+F  H
Sbjct:   66 VFFLEKDLFPGSKMTLHFTRATAGA--ALLPRGRADSVPFASEKLPEILSQLSIPAGSPTADAMRSTLAVCEAARIASETAPKHKHYCATSLESMVELVASSLGTR-DVHAVSTEVVNRAGPTPRQAYRVEAVRPVPVPGGDMVACHRMPYAYAVFGVH 221          
The following BLAST results are available for this feature:
BLAST of FC921379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
BURP3_ORYSJ1.804e-2440.74BURP domain-containing protein 3 OS=Oryza sativa s... [more]
BURPH_ORYSJ1.527e-2339.51BURP domain-containing protein 17 OS=Oryza sativa ... [more]
RAF1B_WHEAT9.898e-2337.18Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
BURP6_ORYSJ1.429e-2140.25BURP domain-containing protein 6 OS=Oryza sativa s... [more]
RAF1A_WHEAT7.094e-2136.54Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURP5_ORYSJ1.210e-2037.97BURP domain-containing protein 5 OS=Oryza sativa s... [more]
RD22_ARATH1.024e-1935.98Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURPD_ORYSJ5.084e-1935.90BURP domain-containing protein 13 OS=Oryza sativa ... [more]
BURP1_ORYSJ1.479e-1838.61BURP domain-containing protein 1 OS=Oryza sativa s... [more]
BURP2_ORYSJ7.341e-1838.99BURP domain-containing protein 2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC32104C06EF RVDevelopN Citrus clementina cDNA clone C32104C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921379 ID=FC921379; Name=FC921379; organism=Citrus clementina; type=EST; length=716bp
GGTTGACATATACAGTCACACAATCTCTTCTCTTTCTGCTTCACTTGTTA
TCTGTGTTTCTTCTCCCTGAAAAAAAAAATTACTAAAATACATAACAAAC
TTCGATAATAGAAAAGAGATGGGGTTACGATTTTCAGCTTGGAACCTCCT
TCTTTCTCTACTCTTTCTGTGTGCTCAGGTGCTTTCGGAGAATCTTCATG
ATTCTCATTCAATACCATCCCACATGAATCACATGGACCCTTCAACGATG
GTGTTCTTCACCTTGAAGGATCTAAAGATTGGCGAAACGATGCCGATTTA
TTTTCGCAAGAGAGATCCTTCAGCTTATCCTCAGGCTTTGCCTAGAGAAG
AAGCAGATTCCATTCCATTTTCATTGAAACAACTGCCTTACCTTCTTCAA
TTCTTCTCGTTCTCGGATGACTCACCCCTAGCCAAAGCCGTGGAAGGGAC
CCTGAATCATTGCGAAGTTCCTCCCATCGAAGGAGAAACCAAAATTTGTG
CTACCTCTTTGGACTCCATGCTTGATTTTGTACACGGAACTTTCGGATTG
GAGATCAAATTCCAAGTTCTAAGCACAAAATTTCTCACAAAATCAACTAC
CATTTTCCAAAATTACACTATTTTACAAGTGCCTAAACCAATGGTTGCTC
CCCAGATGGTGGCATGTCATATCATGCCTTACCCTTATGCAATCTTCTAC
TGCCACAGCCAAATGA
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