FC921382

Overview
NameFC921382
Unique NameFC921382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14298 contig Ccv1_Contig14298:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP4_ARATH (Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 4.583e-105
Identity = 196/231 (84.85%), Postives = 207/231 (89.61%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL DLIRRV TFGMVL+KLDLRQE+ RH+EALDAIT YLDMGTYSEWDE+KKLEFLTRELKGKRPLVP  I+V  DVKEVLDTFRVAAELGS+SLGAYVISMASNASDVLAVELLQKDARLA++ E G+PCPGGTLRVVPLFETV DLR AG  IRKLLSIDWYR+HI KNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQE+VVAACNEFGIK  LF       GRGGG
Sbjct:  513 RLADLIRRVSTFGMVLVKLDLRQEAARHSEALDAITTYLDMGTYSEWDEEKKLEFLTRELKGKRPLVPQCIKVGPDVKEVLDTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARLALTSEHGKPCPGGTLRVVPLFETVNDLRAAGPSIRKLLSIDWYREHIQKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQENVVAACNEFGIKITLFHGRGGSIGRGGG 743          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP2_CHLRE (Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas reinhardtii GN=Ppc2 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.251e-70
Identity = 141/236 (59.75%), Postives = 172/236 (72.88%), Query Frame = 1
Query:    1 RLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGEL-----GRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            RL DLIRRV TFGM LMKLDLRQES RHAEALDA+T YL +G+Y EW ED+K+E+LT+EL+G+RPL+P  + + ++V+EVLDTF+VAA LG D+LGAYVISM   ASDV+AVELLQ++AR+ V  E      G P  GG+LRVVPLFET+ DL  A  V+ +LL+  WYR+H+   H   QEVM+GYSDSGKDAGR  A W LYK QE +VA      +K  LF       GRGGG
Sbjct:  695 RLLDLIRRVYTFGMCLMKLDLRQESTRHAEALDAVTSYLGLGSYLEWSEDQKIEWLTKELQGRRPLIPADMPMSAEVREVLDTFKVAAHLGRDNLGAYVISMTKGASDVMAVELLQREARMQVGAEAGGRGGGGPEDGGSLRVVPLFETLEDLDAAEDVMTRLLTNPWYREHLRAVHGDAQEVMLGYSDSGKDAGRLAANWALYKCQERLVAITKANNVKLTLFHGRGGTVGRGGG 930          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_FLAAU (Phosphoenolpyruvate carboxylase OS=Flaveria australasica PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.016e-60
Identity = 122/228 (53.51%), Postives = 156/228 (68.42%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L+KLD+RQES RH E LDAIT++L +G+Y EW E+K+ E+L  EL GKRPL+ P +    +VK+ LDTF+V AEL SD  GAY+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L S+DWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYK QE +V    EFG+K  +F       GRGGG
Sbjct:  432 DFLRQVSTFGLSLVKLDIRQESDRHTEVLDAITQHLGIGSYREWSEEKRQEWLLAELSGKRPLIGPDLPKTEEVKDCLDTFKVLAELPSDCFGAYIISMATSTSDVLAVELLQREYHIK-----------HPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGG 644          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP2_FLATR (Phosphoenolpyruvate carboxylase OS=Flaveria trinervia PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.016e-60
Identity = 122/228 (53.51%), Postives = 156/228 (68.42%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L+KLD+RQES RH E LDAIT++L +G+Y EW E+K+ E+L  EL GKRPL+ P +    +VK+ LDTF+V AEL SD  GAY+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L S+DWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYK QE +V    EFG+K  +F       GRGGG
Sbjct:  432 DFLRQVSTFGLSLVKLDIRQESDRHTEVLDAITQHLGIGSYREWSEEKRQEWLLAELSGKRPLIGPDLPKTEEVKDCLDTFKVLAELPSDCFGAYIISMATSTSDVLAVELLQREYHIK-----------HPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGG 644          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP1_FLAPR (Phosphoenolpyruvate carboxylase OS=Flaveria pringlei GN=PPCA1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.016e-60
Identity = 122/228 (53.51%), Postives = 157/228 (68.86%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L+KLD+RQES RH + LDAIT++L++G+Y EW E+K+ E+L  EL GKRPL    +    +VK+VLDTF V AEL SD  GAY+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYKAQE+++    EFG+K  +F       GRGGG
Sbjct:  433 DFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLLAELSGKRPLFGSDLPKTEEVKDVLDTFNVLAELPSDCFGAYIISMATSPSDVLAVELLQRECHVK-----------HPLRVVPLFEKLADLEAAPAAMARLFSIDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEEIIKVAKEFGVKLVIFHGRGGTVGRGGG 645          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP1_FLATR (Phosphoenolpyruvate carboxylase OS=Flaveria trinervia GN=PPCA1 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.438e-60
Identity = 122/228 (53.51%), Postives = 155/228 (67.98%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L+KLD+RQES RH E LDAIT++L +G+Y EW E+K+ E+L  EL GKRPL+ P +    +VK+ LDTF V AEL SD  GAY+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L S+DWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYK QE +V    EFG+K  +F       GRGGG
Sbjct:  433 DFLRQVSTFGLSLVKLDIRQESDRHTEVLDAITQHLGIGSYREWSEEKRQEWLLAELSGKRPLIGPDLPKTEEVKDCLDTFNVLAELPSDCFGAYIISMATSTSDVLAVELLQREYHIK-----------HPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGG 645          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_MEDSA (Phosphoenolpyruvate carboxylase OS=Medicago sativa GN=PEPC PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.865e-60
Identity = 119/228 (52.19%), Postives = 159/228 (69.74%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L++LD+RQES RH + +DAIT++L++G+Y EW E+K+ E+L  EL GKRPL  P +    ++++VLDTFRV AEL SD+ GAY+ISMA+  SDVLAVELLQ++ ++              LRVVPLFE + DL  A   + +L SIDWY    I   +G QEVM+GYSDSGKDAGRF+AAW+LYKAQED++    +FG+K  +F       GRGGG
Sbjct:  433 DFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYQEWSEEKRQEWLLSELIGKRPLFGPDLPQTDEIRDVLDTFRVIAELPSDNFGAYIISMATAPSDVLAVELLQRECKVR-----------NPLRVVPLFEKLDDLESAPAALARLFSIDWY----INRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEDLIKVAQKFGVKLTMFHGRGGTVGRGGG 645          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP2_SOYBN (Phosphoenolpyruvate carboxylase OS=Glycine max GN=PPC1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.865e-60
Identity = 119/228 (52.19%), Postives = 157/228 (68.86%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L++LD+RQES RH + LDAIT++L++G+Y EW E+K+ E+L  EL GKRPL  P +    ++++VLDTF V AEL  D+ GAY+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWYR  I    NG QEVM+GYSDSGKDAGRF+AAW+LYKAQE+++    +FG+K  +F       GRGGG
Sbjct:  434 DFMRQVSTFGLSLVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQEWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVIAELPPDNFGAYIISMATAPSDVLAVELLQRECHIK-----------HPLRVVPLFEKLADLEAAPAALARLFSIDWYRNRI----NGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELINVAKKFGVKLTMFHGRGGTVGRGGG 646          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP2_ARATH (Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis thaliana GN=PPC2 PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 7.659e-60
Identity = 121/228 (53.07%), Postives = 155/228 (67.98%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L+KLD+RQES RH++ LDAIT +L +G+Y EW EDK+ E+L  EL GKRPL  P +    +V +VLDTF+V +EL SDS GAY+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SI+WYR  I    NG QEVM+GYSDSGKDAGR +AAW+LYK QE++V    E+G+K  +F       GRGGG
Sbjct:  431 DFLRQVSTFGLALVKLDIRQESERHSDVLDAITTHLGIGSYKEWSEDKRQEWLLSELSGKRPLFGPDLPKTEEVADVLDTFKVISELPSDSFGAYIISMATAPSDVLAVELLQRECGIT-----------DPLRVVPLFEKLADLESAPAAVARLFSIEWYRNRI----NGKQEVMIGYSDSGKDAGRLSAAWQLYKTQEELVKVAKEYGVKLTMFHGRGGTVGRGGG 643          
BLAST of FC921382 vs. ExPASy Swiss-Prot
Match: CAPP_PEA (Phosphoenolpyruvate carboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.306e-59
Identity = 117/228 (51.32%), Postives = 158/228 (69.30%), Query Frame = 1
Query:   10 DLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIK-*LFSWAKREYGRGGG 690
            D +R+V TFG+ L++LD+RQES RH + +DAIT++L++G+Y EW E+K+ E+L  EL GKRPL  P +    ++++VLDTF V AEL SD+ GAY+ISMA+  SDVLAVELLQ++ ++              LRVVPLFE + DL  A   + +L SIDWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYKAQE+++    +F +K  +F       GRGGG
Sbjct:  433 DFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYQEWSEEKRQEWLLSELVGKRPLFGPDLPTTDEIRDVLDTFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECKIK-----------NPLRVVPLFEKLADLEAAPAALARLFSIDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELINVAQKFSVKLTMFHGRGGTVGRGGG 645          
The following BLAST results are available for this feature:
BLAST of FC921382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP4_ARATH4.583e-10584.85Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis t... [more]
CAPP2_CHLRE6.251e-7059.75Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas... [more]
CAPP_FLAAU2.016e-6053.51Phosphoenolpyruvate carboxylase OS=Flaveria austra... [more]
CAPP2_FLATR2.016e-6053.51Phosphoenolpyruvate carboxylase OS=Flaveria triner... [more]
CAPP1_FLAPR2.016e-6053.51Phosphoenolpyruvate carboxylase OS=Flaveria pringl... [more]
CAPP1_FLATR3.438e-6053.51Phosphoenolpyruvate carboxylase OS=Flaveria triner... [more]
CAPP_MEDSA5.865e-6052.19Phosphoenolpyruvate carboxylase OS=Medicago sativa... [more]
CAPP2_SOYBN5.865e-6052.19Phosphoenolpyruvate carboxylase OS=Glycine max GN=... [more]
CAPP2_ARATH7.659e-6053.07Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis t... [more]
CAPP_PEA1.306e-5951.32Phosphoenolpyruvate carboxylase OS=Pisum sativum P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32104C12EF RVDevelopN Citrus clementina cDNA clone C32104C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921382 ID=FC921382; Name=FC921382; organism=Citrus clementina; type=EST; length=705bp
CGGCTCGGTGATCTTATTAGGAGAGTTGTCACCTTTGGAATGGTGTTGAT
GAAGCTTGACTTGCGTCAGGAATCTGGTAGACATGCTGAAGCGCTAGATG
CAATTACGAGATATTTGGATATGGGTACATACAGTGAGTGGGACGAAGAC
AAAAAACTGGAATTTCTAACGAGGGAGTTGAAAGGAAAGCGGCCTTTAGT
TCCGCCTACTATTGAGGTTCCTTCTGATGTTAAAGAAGTCTTGGATACCT
TCCGTGTTGCTGCTGAGCTAGGGAGTGATTCACTTGGGGCATACGTCATT
TCTATGGCTTCTAATGCAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAA
AGACGCCCGACTTGCTGTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTG
GAACGCTACGTGTGGTTCCTCTGTTTGAGACTGTGACGGACTTGAGAGGA
GCTGGTTTGGTGATCAGGAAATTGTTATCAATTGACTGGTATAGAAAGCA
CATTATAAAAAACCATAACGGGCATCAAGAGGTGATGGTTGGATATTCTG
ATTCTGGTAAAGATGCTGGACGCTTCACTGCTGCATGGGAACTATACAAA
GCCCAAGAGGATGTTGTGGCTGCCTGCAATGAGTTTGGTATTAAGTGACT
CTTCTCATGGGCGAAGAGGGAGTATGGCCGTGGTGGTGGCCTACATATCT
TGCAT
back to top