FC921388

Overview
NameFC921388
Unique NameFC921388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:60..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.124e-74
Identity = 136/194 (70.10%), Postives = 154/194 (79.38%), Query Frame = 1
Query:  115 DDVDQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            D  D +IRQV  G +            +L +E HFSLFK+KF K YAS EEHD RF++FKANLRRA R QKLDPSATHGVTQFSDLT +EFR+ +LG+R   +LPKDA++APILPT +LP DFDWR+ GAV PVK+QGSCGSCWSFS TGALEGANFL TGKLVSLSEQQLVDCDHECDPEE  SCDSG +GGL
Sbjct:   27 DGDDLVIRQVVGGAEP----------QVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLPEDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGL 210          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.313e-72
Identity = 134/193 (69.43%), Postives = 153/193 (79.27%), Query Frame = 1
Query:  118 DVDQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            D D LIRQV D           T   +L +E HF+LFKKKF K Y S EEH  RF++FKANL RA R QK+DPSA HGVTQFSDLT +EFRR +LG++   +LPKDA+QAPILPT +LP +FDWR++GAV PVK+QGSCGSCWSFSTTGALEGA+FL TGKLVSLSEQQLVDCDHECDPEE GSCDSG +GGL
Sbjct:   25 DEDVLIRQVVD----------ETEPKVLSSEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLPEEFDWRDRGAVTPVKNQGSCGSCWSFSTTGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGL 207          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.737e-70
Identity = 126/191 (65.97%), Postives = 152/191 (79.58%), Query Frame = 1
Query:  124 DQLIRQVTDGGDEILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            D +IRQV D  ++           LL AEHHF+ FK KF+K+YA++EEHD RF +FK+NL +A   Q  DP+A HG+T+FSDLT +EFRR +LGL+++LRLP  A +APILPT +LP DFDWREKGAV PVKDQGSCGSCW+FSTTGALEGA++L TGKLVSLSEQQLVDCDH CDPE+ GSCDSG +GGL
Sbjct:   27 DFIIRQVVDNEED----------HLLNAEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGALEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGL 207          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.713e-65
Identity = 126/201 (62.69%), Postives = 146/201 (72.64%), Query Frame = 1
Query:  112 IDDVDQLIRQVTDGGDEILSHHESTNNDL-LGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLR-----LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            +D  D LIRQV  GGD+         NDL L AE HF  F ++F K+Y   +EH  R ++FK NLRRA R Q LDPSA HGVT+FSDLTPAEFRRTYLGLR+  R     L + A +AP+LPT+ LP DFDWR+ GAVGPVK+QGSCGSCWSFS +GALEGA++L TGKL  LSEQQ VDCDHECD  E  SCDSG +GGL
Sbjct:   21 VDAEDPLIRQVVPGGDD---------NDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLPDDFDWRDHGAVGPVKNQGSCGSCWSFSASGALEGAHYLATGKLEVLSEQQFVDCDHECDSSEPDSCDSGCNGGL 212          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 84/176 (47.73%), Postives = 104/176 (59.09%), Query Frame = 1
Query:  199 LGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRA------ARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPT---NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHEC-DPEETGSCDSGMHGGL 696
            L  +  F  F+ KFNK Y S EE+  RF IFK+NL +       A   K D     GV +F+DL+  EF+  YL  +  +    D   A  L     N +P  FDWR +GAV PVK+QG CGSCWSFSTTG +EG +F+   KLVSLSEQ LVDCDHEC + E   +CD G +GGL
Sbjct:   23 LEEQSQFLEFQDKFNKKY-SHEEYLERFEIFKSNLGKIEELNLIAINHKADTK--FGVNKFADLSSDEFKNYYLNNKEAI-FTDDLPVADYLDDEFINSIPTAFDWRTRGAVTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGL 194          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31
Identity = 75/160 (46.88%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  217 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAAR-RQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL---PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGM 684
            F+ +  KFN+ Y+S E    R++IFK+N+        K D     G+  F+D+T  E+R+TYLG R         D   +L   DL   P   DWR K AV P+KDQG CGSCWSFSTTG+ EGA+ L T KLVSLSEQ LVDC     PEE   CD G+
Sbjct:   36 FTEWTLKFNRQYSSSE-FSNRYSIFKSNMDYVDNWNSKGDSQTVLGLNNFADITNEEYRKTYLGTRVNAHSYNGYDGREVLNVEDLQTNPKSIDWRTKNAVTPIKDQGQCGSCWSFSTTGSTEGAHALKTKKLVSLSEQNLVDCS---GPEENFGCDGGL 191          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.723e-30
Identity = 71/152 (46.71%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  265 EHDRRFTIFKANLRRAARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLR----RKLRLPKDADQAPILPTN--DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            + D+RF IFK NLR      + + +AT+  G+T+F+DLT  E+R+ YLG R    R++   K+ +Q      N  ++P   DWR+KGAV P+KDQG+CGSCW+FSTT A+EG N + TG+L+SLSEQ+LVDCD         S + G +GGL
Sbjct:   69 DQDKRFNIFKDNLRFIDLHNEDNKNATYKLGLTKFTDLTNDEYRKLYLGARTEPARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDCDK--------SYNQGCNGGL 212          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 77/161 (47.83%), Postives = 96/161 (59.63%), Query Frame = 1
Query:  226 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQK-LDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL---PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            FK K+ K Y   E+ + RF IFK+N+ +A   Q  +  SA +GVT +SDLT  EF RT+L       +P      P       N++P +FDWREKGAV  VK+QG CGSCW+FSTTG +E   F  TGKL+SLSEQQLVDCD           D G +GGL
Sbjct:   23 FKLKYRKQYHETED-EIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHL--TASWVVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCD---------GLDDGCNGGL 171          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 73/183 (39.89%), Postives = 102/183 (55.74%), Query Frame = 1
Query:  163 ILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDCDHECDPEETGSCDSGMHGGL 696
            I+S+ E +  +   A   ++ +K +  K+Y +  E +RR+  F+ NLR          +  H    G+ +F+DLT  E+R TYLGLR K R  +      +   N+ LP   DWR KGAV  +KDQG CGSCW+FS   A+EG N + TG L+SLSEQ+LVDCD         S + G +GGL
Sbjct:   25 IVSYGERSEEE---ARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCD--------TSYNEGCNGGL 196          
BLAST of FC921388 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 79/176 (44.89%), Postives = 95/176 (53.98%), Query Frame = 1
Query:  118 DVDQLIRQVTDGGDEILSHHESTNNDLLGAEHH---FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLXTGKLVSLSEQQLVDC 636
            D    IR V+DG  E+    E + + +LG   H   F+ F  ++ K Y + EE   RF+IFK NL       K   S   GV QF+DLT  EF+RT LG  +             +    LP   DWRE G V PVKDQG CGSCW+FSTTGALE A     GK +SLSEQQLVDC
Sbjct:   27 DESNPIRMVSDGLREV----EESVSQILGQSRHVLSFARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCSATLKGSHK--VTEAALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDC 196          
The following BLAST results are available for this feature:
BLAST of FC921388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
RD19A_ARATH3.124e-7470.10Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH1.313e-7269.43Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP_PEA2.737e-7065.97Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CYSP1_MAIZE7.713e-6562.69Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CYSP1_DICDI4.564e-3347.73Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CYSP2_DICDI5.579e-3146.88Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
GCP1_ARATH4.723e-3046.71Germination-specific cysteine protease 1 OS=Arabid... [more]
CATL_SCHMA3.061e-2947.83Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
ORYA_ORYSJ3.998e-2939.89Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
ALEU_ARATH5.222e-2944.89Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC32104D06EF RVDevelopN Citrus clementina cDNA clone C32104D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921388 ID=FC921388; Name=FC921388; organism=Citrus clementina; type=EST; length=696bp
GAACGAACGCTTCTATTGATATCAGCATTGTCTAAAAGCATGGGATCTAA
AACAGTAGTTTTCTTTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCAT
CAGGGACGTTGATCGACGATGTTGATCAGCTGATCAGGCAAGTAACGGAC
GGCGGTGACGAGATCCTAAGCCACCACGAGAGCACCAACAACGACCTCTT
GGGCGCAGAGCACCACTTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGT
ACGCTTCGCAGGAGGAGCACGACCGTAGGTTCACTATTTTCAAGGCCAAC
TTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGG
CGTCACTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACC
TTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCG
ATCTTGCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGG
CGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTT
TCAGTACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGNCACTGGAAAG
CTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGA
TCCTGAGGAAACAGGTTCTTGTGATTCTGGGATGCATGGTGGGCTT
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