FC921433

Overview
NameFC921433
Unique NameFC921433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig320 contig Ccv1_Contig320:458..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: AB13I_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.728e-110
Identity = 201/233 (86.27%), Postives = 218/233 (93.56%), Query Frame = 3
Query:    3 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQXMTHEFTSSSN 701
            EKHIL+GVSFKIRHGEAVG+IGPSGTGKSTILKI+AGLLAPDKGEVYIRG+KRAGLISDEEISGLRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLKGVE+RLPSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH   E+ +  PG IASY+VVTHQHSTI+RAVDRL+FLYEGKIVWQ MTHEFT+S+N
Sbjct:   96 EKHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYIRGKKRAGLISDEEISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLKGVENRLPSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTDEDAVGKPGKIASYLVVTHQHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTSTN 328          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: MKL_MYCTU (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuberculosis GN=mkl PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.597e-31
Identity = 79/219 (36.07%), Postives = 123/219 (56.16%), Query Frame = 3
Query:   12 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 662
            I   V+  I  GE   ++GPSGTGKS  LK + GLL P++G + I G       + E  EI  L  G++FQ  ALF S+ + +N  F L E++K ++ +I ++V E LA VGL G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+ +  +  LI  ++ + +         A+ ++VTH  +  R   D +  L+   +V
Sbjct:   42 IWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSIIIDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIVMEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPVRTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLV 243          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: MKL_MYCBO (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium bovis GN=mkl PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.597e-31
Identity = 79/219 (36.07%), Postives = 123/219 (56.16%), Query Frame = 3
Query:   12 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 662
            I   V+  I  GE   ++GPSGTGKS  LK + GLL P++G + I G       + E  EI  L  G++FQ  ALF S+ + +N  F L E++K ++ +I ++V E LA VGL G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+ +  +  LI  ++ + +         A+ ++VTH  +  R   D +  L+   +V
Sbjct:   42 IWEDVTLTIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSIIIDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIVMEKLALVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPVRTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLV 243          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: CBIO_METJA (Putative cobalt import ATP-binding protein cbiO OS=Methanocaldococcus jannaschii GN=cbiO PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 82/233 (35.19%), Postives = 136/233 (58.37%), Query Frame = 3
Query:   12 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGR----KRAGLISDEEISGLRIGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQXMTHEFTS 692
            +L+G++FK++ GE V ++GP+G GKST+     G+L P KGEV I+G+     +  L+   +     +GLVFQ+    +F + TV+E+V F    N  +  E++ + VKE L AVG++G E++ P  LSGG KKRVA+A  +       +++PEV++ DEPTAGLDP+ ++ +  L+  ++KKG           + ++ TH    +    D++  +Y+GKI+ +    E  S
Sbjct:   19 VLKGINFKVKKGEMVSLLGPNGAGKSTLFLHFNGILRPTKGEVLIKGKPIKYDKKSLVEVRK----TVGLVFQNPDDQIF-APTVKEDVAFGPL-NLGLPKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL-------AMQPEVIVLDEPTAGLDPVGASKIMKLLYDLNKKG----------MTIIISTHDVDLVPVYADKVYVMYDGKILKEGTPKEVFS 228          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: MKL_MYCLE (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium leprae GN=mkl PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30
Identity = 78/219 (35.62%), Postives = 122/219 (55.71%), Query Frame = 3
Query:   12 ILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDE--EISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 662
            I   V+  I  GE   ++GPSGTGKS  LK + GLL P++G + I G       + E  EI  L  G++FQ  ALF S+ + +N  F L E++K ++ +I ++V E L  VGL G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+ +  +  LI  ++ + +         A+ ++VTH  +  R   D +  L+   +V
Sbjct:   30 IWEDVTLDIPAGEVSVLLGPSGTGKSVFLKSLIGLLRPERGSILIDGTDIIECSAKELYEIRTL-FGVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIVMEKLQLVGLGGDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPVRTAYLSQLIMDINAQID---------ATILIVTHNVNIARTVPDNMGMLFRKHLV 231          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: CYSA_SYNE7 (Sulfate/thiosulfate import ATP-binding protein cysA OS=Synechococcus elongatus (strain PCC 7942) GN=cysA PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30
Identity = 79/215 (36.74%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   15 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 659
            ++ V   +  G  V ++GPSG+GKST+L++IAGL  PD G +++ GR      ++E +   +IG VFQ  ALF  LTVR+N+ F L E  K   E++   V+E L  V L G+ DR PS+LSGG ++RVALAR++       +V+P+VLL DEP   LD      +   +R +H +            + V VTH         D+++ +  GK+
Sbjct:   24 VKDVDLTVETGSLVALLGPSGSGKSTLLRLIAGLEQPDSGRIFLTGRD----ATNESVRDRQIGFVFQHYALFKHLTVRKNIAFGL-ELRKHTKEKVRARVEELLELVQLTGLGDRYPSQLSGGQRQRVALARAL-------AVQPQVLLLDEPFGALDAKVRKDLRSWLRKLHDEVH---------VTTVFVTHDQEEAMEVADQIVVMNHGKV 217          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: METN_BORA1 (Methionine import ATP-binding protein metN OS=Bordetella avium (strain 197N) GN=metN PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.810e-29
Identity = 85/225 (37.78%), Postives = 126/225 (56.00%), Query Frame = 3
Query:   15 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISG--LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQXMTHE 683
            LRG+   I  GE  GIIGPSG GKST+++ I  L  PD+G + I G++  GL S+ ++ G   RIG+VFQ   L    TV  NV   L E + +  ++I   V+  LA VGL+ + DR PS++SGG K+RV +AR++  D       P+VLL DE T+ LDP  +  +  L+R +++K            + V++THQ   +R   DR+  L  G++V    T +
Sbjct:   21 LRGIDLLIEQGEVFGIIGPSGAGKSTLVQCINLLERPDQGSISIGGQELTGL-SEAQLRGQRRRIGMVFQGFNLLSRRTVYGNVALPL-EIAGVPRQEIPGKVERLLALVGLEHLRDRYPSQISGGQKQRVGIARALAND-------PDVLLSDEATSALDPETTHNILALLRDINRK---------TGVTVVMITHQMEVVREICDRVAVLSHGQVVEMARTQD 227          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: Y1087_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI1087 OS=Haemophilus influenzae GN=HI1087 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 76/235 (32.34%), Postives = 135/235 (57.45%), Query Frame = 3
Query:    3 EKHILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQXMTHEFTSSSN 701
            ++ I   ++ +++ G+   I+GPSG GK+T+LK+I G L P++GE+   G+    L S+ E+  +R  +G++FQS ALF  ++  +NV F + E++ + +  I ++V   L AVGL+G    +PSELSGGM +R ALAR+I  D       P+++++DEP  G DPI+  V+  LI+ +++          N+ S +VV+H    +    D    + + K++ +  + +   S +
Sbjct:   17 DRVIYDNLNLQVKKGKITAIMGPSGIGKTTLLKLIGGQLMPEQGEILFDGQDICRL-SNRELYEVRKRMGMLFQSGALFTDISTFDNVAFPIREHTHLPENLIRQIVLMKLEAVGLRGAAALMPSELSGGMARRAALARAIALD-------PDLIMFDEPFTGQDPISMGVILSLIKRLNE--------ALNLTS-IVVSHDVEEVLSIADYAYIIADQKVIAEGTSEQLLQSQD 234          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: CYSA_BACHD (Sulfate/thiosulfate import ATP-binding protein cysA OS=Bacillus halodurans GN=cysA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 76/218 (34.86%), Postives = 124/218 (56.88%), Query Frame = 3
Query:   15 LRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLY---ENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 659
            L  ++  I  GE V ++GPSG+GK+++L+IIAGL A D+G++Y    K    ++    +  ++G VFQ  ALF  +TV +N+ + L       +   ++I+E V+E LA V L+G++DR P++LSGG ++R+ALAR++       +VEP+VLL DEP   LD      +   +R +H + +          + V VTH         DR++ + +GKI
Sbjct:   18 LADINLSIETGELVALLGPSGSGKTSLLRIIAGLEAADQGDIYFHKDK----VTQTHAASRQVGFVFQHYALFPHMTVADNISYGLRVKPRKERPSKKEIAEKVRELLALVKLEGMDDRYPAQLSGGQRQRIALARAL-------AVEPKVLLLDEPFGALDAKVRKDLRKWLRKLHNEFQ---------VTSVFVTHDQEEALDVSDRVVVMNQGKI 215          
BLAST of FC921433 vs. ExPASy Swiss-Prot
Match: TCYN_BACSU (L-cystine import ATP-binding protein tcyN OS=Bacillus subtilis GN=tcyN PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.032e-29
Identity = 85/228 (37.28%), Postives = 125/228 (54.82%), Query Frame = 3
Query:    9 HILRGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRK-RAGLISDEEISGLR--IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLKGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQXMTHE 683
            H+L+G++  +R GE V IIGPSG+GK+T L+ +  L  PD+G + I  +       S +E+  LR    +VFQ   LF   TV ENV   L    KMR +    + +  L  VGL+   +  PS+LSGG K+RV +AR++       ++ P+VLL+DEPTA LDP     V +++  + K G          A+ +VVTH+    RR  D+++F+ EG IV Q    E
Sbjct:   15 HVLKGINLTVRKGEVVTIIGPSGSGKTTFLRCLNLLERPDEGIISIHDKVINCRFPSKKEVHWLRKQTAMVFQQYHLFAHKTVIENVMEGLTIARKMRKQDAYAVAENELRKVGLQDKLNAYPSQLSGGQKQRVGIARAL-------AIHPDVLLFDEPTAALDPELVGEVLEVMLEIVKTG----------ATMIVVTHEMEFARRVSDQVVFMDEGVIVEQGTPEE 225          
The following BLAST results are available for this feature:
BLAST of FC921433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AB13I_ARATH2.728e-11086.27Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplast... [more]
MKL_MYCTU9.597e-3136.07Probable ribonucleotide transport ATP-binding prot... [more]
MKL_MYCBO9.597e-3136.07Probable ribonucleotide transport ATP-binding prot... [more]
CBIO_METJA2.138e-3035.19Putative cobalt import ATP-binding protein cbiO OS... [more]
MKL_MYCLE3.647e-3035.62Probable ribonucleotide transport ATP-binding prot... [more]
CYSA_SYNE73.647e-3036.74Sulfate/thiosulfate import ATP-binding protein cys... [more]
METN_BORA11.810e-2937.78Methionine import ATP-binding protein metN OS=Bord... [more]
Y1087_HAEIN3.087e-2932.34Uncharacterized ABC transporter ATP-binding protei... [more]
CYSA_BACHD3.087e-2934.86Sulfate/thiosulfate import ATP-binding protein cys... [more]
TCYN_BACSU4.032e-2937.28L-cystine import ATP-binding protein tcyN OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionC32104H07EF RVDevelopN Citrus clementina cDNA clone C32104H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921433 ID=FC921433; Name=FC921433; organism=Citrus clementina; type=EST; length=703bp
GGGAAAAGCATATATTGAGAGGTGTGAGCTTCAAGATTAGACATGGTGAA
GCTGTTGGTATAATAGGGCCTTCAGGCACTGGGAAATCAACGATTTTAAA
GATTATTGCTGGGCTTCTTGCTCCAGACAAGGGAGAGGTTTACATTCGAG
GTAGGAAGAGAGCTGGTTTGATTAGCGATGAGGAGATATCTGGTCTTCGG
ATTGGATTGGTTTTCCAAAGTGCGGCTCTTTTTGACTCATTGACTGTCCG
GGAAAATGTTGGTTTCCTTCTGTATGAAAATTCGAAGATGCGTGATGAAC
AAATTTCAGAGCTTGTGAAGGAAAATTTGGCTGCTGTTGGATTAAAGGGA
GTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAAAGAGT
TGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCAGTGGAGC
CAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCATTGCA
TCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGTGAAAA
TGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTACTCACC
AACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCTACGAG
GGTAAGATTGTTTGGCAGGNAATGACCCATGAATTCACATCATCATCCAA
TCC
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