FC921434

Overview
NameFC921434
Unique NameFC921434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11853 contig Ccv1_Contig11853:1225..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC921434 vs. ExPASy Swiss-Prot
Match: SCP50_ARATH (Serine carboxypeptidase-like 50 OS=Arabidopsis thaliana GN=SCPL50 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.966e-23
Identity = 52/90 (57.78%), Postives = 63/90 (70.00%), Query Frame = 3 
Query:    3 VVSTEAWVKTMKWEGIESFLMAERKVWKVKEEL-AGYVQKWGNLSHVVVLGAGHLVPTDQPLNSQIMIEDWVLDKCLFAANHHKKPPPSS 269
            VVSTE W+KTM W G+  F  AER+VWK ++ + AGYVQ+WGNL HV V GAGH VPTD+ +NS+ MIE WVL K LF     K+   SS
Sbjct:  350 VVSTEEWMKTMNWSGLGMFSTAERRVWKDEDGVVAGYVQRWGNLCHVAVTGAGHFVPTDKAVNSRDMIEGWVLGKGLFGGKDVKQTTSSS 439
[Close]
BLAST of FC921434 vs. ExPASy Swiss-Prot
Match: CPVL_DICDI (Probable serine carboxypeptidase CPVL OS=Dictyostelium discoideum GN=cpvl PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 28/71 (39.44%), Postives = 49/71 (69.01%), Query Frame = 3 
Query:   12 TEAWVKTMKWEGIESFLMAERKVWKVKEE---LAGYVQKWGNLSHVVVLGAGHLVPTDQPLNSQIMIEDWV 215
            TE  ++T++WEGI+ FL + + +WK+  +   +AG+V++W + + VVV  AGH+VP DQP  +  MI+ ++
Sbjct:  422 TETMIRTIEWEGIQPFLESPKIIWKIPSDNVDVAGFVRQWNSFTQVVVRQAGHMVPLDQPARAFDMIDRFI 492
The following BLAST results are available for this feature:
BLAST of FC921434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SCP50_ARATH4.966e-2357.78Serine carboxypeptidase-like 50 OS=Arabidopsis tha... [more]
CPVL_DICDI5.695e-1139.44Probable serine carboxypeptidase CPVL OS=Dictyoste... [more]
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Properties
Property NameValue
Genbank descriptionC32104H08EF RVDevelopN Citrus clementina cDNA clone C32104H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921434 ID=FC921434; Name=FC921434; organism=Citrus clementina; type=EST; length=419bp
GTGTGGTTTCAACCGAGGCTTGGGTGAAGACAATGAAATGGGAAGGAATT
GAGAGCTTCTTGATGGCTGAGAGGAAAGTTTGGAAAGTGAAAGAAGAGCT
TGCTGGGTATGTGCAGAAATGGGGTAATTTAAGCCATGTTGTTGTTTTGG
GTGCTGGGCATCTTGTGCCTACGGATCAGCCATTGAATTCTCAGATAATG
ATTGAAGATTGGGTTCTTGACAAGTGCTTGTTTGCTGCCAATCATCATAA
GAAGCCACCTCCATCCAGTTTCAGATTACTCTGAAGAAATTACATCATGT
CATATGCTTCTAGTGCTATAATTTATTCTTGTATCGAGTGAATTCTGCAA
CCTTTATTCTATTCCCACTGAATAAACTCAAGCAGCTTTAACCAANAAAA
AAAAAAAAAAAAAAAAAAA
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