FC921459

Overview
NameFC921459
Unique NameFC921459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length365
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921459_ssr306 microsatellite FC921459_ssr306:306..315. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15204 contig Ccv1_Contig15204:88..452. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921459 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  121 MNRHHDPNPFDEEE--VNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEAD 336
            MNRHHDPNPFDE+E  VNPFS G        +VP+  S P+ +GQ   ATVDIPLDNMN+  +K+R+LA WEA+
Sbjct:    1 MNRHHDPNPFDEDEEIVNPFSKGGG------RVPAA-SRPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAE 67          
BLAST of FC921459 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.524e-14
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  121 MNRHHDPNPFDEEEVNPFSNGPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEAD 336
            M   +D NPFDE++VNPF+ G   PAS S++P +  EP GF    GATVDIPLD+  + KKKE+EL + EA+
Sbjct:    1 MAGRYDRNPFDEDDVNPFAGGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMKKKEKELQAKEAE 71          
BLAST of FC921459 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.741e-13
Identity = 41/75 (54.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  130 HHDPNPFDEEEV--NPFSNGPAAPA---SRSQVPSVTSEPIGFGQKYG-ATVDIPLDNMNEPKKKERELASWEAD 336
            HHDPNPFDE     NPFSNG        SR Q     +EP GFG   G ATVD+PLD M + K K REL+SWE D
Sbjct:    2 HHDPNPFDEGNADDNPFSNGGGGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMGDSKSKARELSSWETD 76          
BLAST of FC921459 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  121 MNRHHDPNPFDEEEVNPFSN-GPAAPASRSQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEAD 336
            M   +DPNPFDEE+VNPFSN   AA A+ S+   +  +   +   +G TVDIPLD   + KKKER+L + EA+
Sbjct:    1 MAGRYDPNPFDEEQVNPFSNPRSAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKERDLQAKEAE 73          
BLAST of FC921459 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 42/84 (50.00%), Postives = 47/84 (55.95%), Query Frame = 1
Query:  130 HHDPNPFDE-EEVNPFSNGPAAPASR--------------SQVPSVTSEPIGFGQKYGATVDIPLDNMNEPKKKERELASWEAD 336
            HHDPNPFDE  + NPFSNG    A R              SQ  S     +G G K GATVDIPLDNM++ K K +EL  WEAD
Sbjct:    2 HHDPNPFDEGADDNPFSNGGGGGARRGGGGGGGGGGGGGKSQF-SFGFGGLGGGSKGGATVDIPLDNMSDSKGKGKELLQWEAD 84          
BLAST of FC921459 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.377e-11
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  121 MNRHHDPNPF-DEEEVNPFSNGPAAP-ASRSQVPSVTSEPIGFGQKYGATVDIPLDNMN--EPKKKERELASWEAD 336
            M   +DPNPF +EEEVNPF+N    P AS S++  +  EP+GF   YG TVDIPLD     + KKKE+EL + EA+
Sbjct:    1 MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFD--YGRTVDIPLDRAGTQDLKKKEKELQAKEAE 74          
The following BLAST results are available for this feature:
BLAST of FC921459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SCAM4_ARATH9.105e-1758.11Secretory carrier-associated membrane protein 4 OS... [more]
SCAM2_ORYSJ5.524e-1452.78Secretory carrier-associated membrane protein 2 OS... [more]
SCAM6_ORYSJ2.741e-1354.67Secretory carrier-associated membrane protein 6 OS... [more]
SCAM_PEA1.965e-1147.95Secretory carrier-associated membrane protein OS=P... [more]
SCAM5_ORYSJ1.965e-1150.00Secretory carrier-associated membrane protein 5 OS... [more]
SCAM3_ARATH4.377e-1151.32Secretory carrier-associated membrane protein 3 OS... [more]
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Properties
Property NameValue
Genbank descriptionC32105B12EF RVDevelopN Citrus clementina cDNA clone C32105B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921459 ID=FC921459; Name=FC921459; organism=Citrus clementina; type=EST; length=365bp
GACCGCACAGCACCAGCAGCAACTAATAGTAGTGTTAGTGAATTTGCGAA
GTTAGGTGCAAAATTTAGGGATCTGAAAGAGAGAAAAAAAAACCAAAAAA
AGAAAAAAAAACACGAATCAATGAATCGCCACCACGACCCAAATCCCTTC
GATGAAGAAGAGGTCAATCCATTTTCGAATGGCCCGGCTGCTCCCGCATC
AAGGTCACAGGTTCCTTCTGTGACATCTGAACCTATTGGATTTGGACAGA
AATATGGGGCAACAGTTGATATTCCACTAGATAATATGAATGAGCCTAAG
AAAAAAGAGAGAGAGCTTGCATCATGGGAAGCAGATCANAAAAAAAAAAA
AAAAAAAAAAAAAAA
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