FC921470

Overview
NameFC921470
Unique NameFC921470
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8537 contig Ccv1_Contig8537:10..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: EB1_DICDI (Microtubule-associated protein RP/EB family member 1 OS=Dictyostelium discoideum GN=eb1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 2 
Query:  212 GRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            GRNE+L WIN+ LQL   +IE+  SGA  CQ++D+ +PG + +  VNF+AK +Y+ I+N+  LQ+ F KL ++K++EV++LVK RP  NLEF QW+K+Y D    G   E YN +ERR
Sbjct:    5 GRNEILNWINDLLQLDYKKIEQLGSGAALCQLVDIIHPGKINLKMVNFNAKYDYEYIKNFSYLQESFAKLGVEKYVEVSELVKSRPQANLEFAQWMKKYFDQYYTG---EPYNAIERR 119
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: MARE1_XENTR (Microtubule-associated protein RP/EB family member 1 OS=Xenopus tropicalis GN=mapre1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.130e-26
Identity = 58/119 (48.74%), Postives = 84/119 (70.59%), Query Frame = 2 
Query:  209 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            + R+++L WIN  LQL+L++IE+  SG+V CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F K+ +DK I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGSVYCQFMDMLFPGSVVLKKVKFQAKLEHEYIQNFKVLQAGFKKMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAAR 130
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: MARE1_PONAB (Microtubule-associated protein RP/EB family member 1 OS=Pongo abelii GN=MAPRE1 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 55/119 (46.22%), Postives = 83/119 (69.75%), Query Frame = 2 
Query:  209 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ +DK I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAAR 130
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: MARE1_HUMAN (Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 55/119 (46.22%), Postives = 83/119 (69.75%), Query Frame = 2 
Query:  209 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ +DK I V+KLVKG+  DN EF+QW K++ D+   G   ++Y+PV  R
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KDYDPVAAR 130
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: MARE1_RAT (Microtubule-associated protein RP/EB family member 1 OS=Rattus norvegicus GN=Mapre1 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 55/119 (46.22%), Postives = 82/119 (68.91%), Query Frame = 2 
Query:  209 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ +DK I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: MARE1_MOUSE (Microtubule-associated protein RP/EB family member 1 OS=Mus musculus GN=Mapre1 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 55/119 (46.22%), Postives = 82/119 (68.91%), Query Frame = 2 
Query:  209 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ +DK I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: MARE1_BOVIN (Microtubule-associated protein RP/EB family member 1 OS=Bos taurus GN=MAPRE1 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 55/119 (46.22%), Postives = 82/119 (68.91%), Query Frame = 2 
Query:  209 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            + R+++L WIN  LQL+L++IE+  SGA  CQ +DM +PG + + KV F AK E++ IQN+K+LQ  F ++ +DK I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   15 LSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: MARE1_COTJA (Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix japonica GN=MAPRE1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 2 
Query:  209 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            + R+++L WIN  LQL L++IE+  SGA  CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F ++ +DK I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   15 LSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: MARE1_COTCO (Microtubule-associated protein RP/EB family member 1 OS=Coturnix coturnix GN=MAPRE1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 2 
Query:  209 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            + R+++L WIN  LQL L++IE+  SGA  CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F ++ +DK I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   15 LSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
[Close]
BLAST of FC921470 vs. ExPASy Swiss-Prot
Match: MARE1_CHICK (Microtubule-associated protein RP/EB family member 1 OS=Gallus gallus GN=MAPRE1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 2 
Query:  209 VGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIDKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 565
            + R+++L WIN  LQL L++IE+  SGA  CQ +DM +PG V + KV F AK E++ IQN+KVLQ  F ++ +DK I V+KLVKG+  DN EF+QW K++ D+   G   + Y+PV  R
Sbjct:   15 LSRHDMLAWINESLQLTLTKIEQLCSGAAYCQFMDMLFPGSVALKKVKFQAKLEHEYIQNFKVLQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG---KEYDPVAAR 130
The following BLAST results are available for this feature:
BLAST of FC921470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
EB1_DICDI7.825e-2849.15Microtubule-associated protein RP/EB family member... [more]
MARE1_XENTR1.130e-2648.74Microtubule-associated protein RP/EB family member... [more]
MARE1_PONAB4.294e-2646.22Microtubule-associated protein RP/EB family member... [more]
MARE1_HUMAN4.294e-2646.22Microtubule-associated protein RP/EB family member... [more]
MARE1_RAT5.608e-2646.22Microtubule-associated protein RP/EB family member... [more]
MARE1_MOUSE5.608e-2646.22Microtubule-associated protein RP/EB family member... [more]
MARE1_BOVIN5.608e-2646.22Microtubule-associated protein RP/EB family member... [more]
MARE1_COTJA7.324e-2647.90Microtubule-associated protein RP/EB family member... [more]
MARE1_COTCO7.324e-2647.90Microtubule-associated protein RP/EB family member... [more]
MARE1_CHICK7.324e-2647.90Microtubule-associated protein RP/EB family member... [more]

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Properties
Property NameValue
Genbank descriptionC32105D01EF RVDevelopN Citrus clementina cDNA clone C32105D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921470 ID=FC921470; Name=FC921470; organism=Citrus clementina; type=EST; length=715bp
TGCCGGGGACTGTCTTCTTTCGGTTTCTCTCTTCTTCTCATTATCAATCA
TCTCTTTTCTTCTTCTTTTTTTTAAAAAATAAATCTTGTTTTTCAAAAGT
CTTCCTGTCAATTACTATTATTTTTGTTTTTCGAGTTTTGAAGCTTTGAA
GAAATTGATTAAGATAAATATGGCAACCAACATTGGAATGATGGACAGTG
CGTATTTTGTTGGAAGAAATGAGCTATTGACTTGGATCAACAACAGGCTT
CAGCTTCATCTCTCTCGCATTGAAGAGGCTGCGTCCGGGGCAGTGCAGTG
TCAAATGTTGGACATGACCTACCCAGGAGTTGTTCCAATGCACAAGGTAA
ATTTTGATGCGAAGACCGAATATGACATGATCCAAAATTACAAGGTCCTG
CAGGATGTATTTAACAAGTTGAAAATTGACAAGCATATTGAAGTCAATAA
GCTTGTCAAAGGCCGACCTTTGGACAACTTAGAGTTCTTACAATGGCTGA
AACGTTACTGTGATTCTGTAAATGGTGGCATCATGAATGAGAACTACAAT
CCTGTGGAGCGTAGATGCAAGGGTGGGAAGGAACGGAGCTCTAGGGGTTC
TCAGAAGATTTCAAAATCACTGCAAACAAACAATATGCATAACGCTGGCT
CTGGTGACATTGGCCACAGTAAAATTTCTGGGCCCCAGCAAAGCAAGATA
TATGGNAGCTACTCT
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