FC921474

Overview
NameFC921474
Unique NameFC921474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9365 contig Ccv1_Contig9365:337..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.809e-32
Identity = 82/224 (36.61%), Postives = 130/224 (58.04%), Query Frame = 3
Query:    3 SGGDVIALYQLLNEGKFEDF--KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVL---RKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQ 659
            +GGDV A+    + GK  D   +++F   Y+     GT  KP+VA++DGITMG G G+S+ G +RV T+KTVF+ PET +G  PD G  ++L  L G +G  LALTG +L G +++  G+ATH+  +G+LP +E+ +  L +     I   L  Y     +D+E        +E I+  FS +++EEI+  L+ + +     +  K +E + + SP SLK+TL+
Sbjct:   95 AGGDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKSPSKENIADLLNSYHMQTKIDQEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGSP----FATKQLEAINKMSPTSLKLTLR 311          
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.068e-31
Identity = 73/220 (33.18%), Postives = 125/220 (56.82%), Query Frame = 3
Query:    3 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKI-ETIDKCFSHDTIEEIIDALENEAA--SSYDVWCRKAVEKLKEASPLSLKVT 653
            SGGD+ A    + +GK  + ++ F   Y+  +   T+ KP VA+++GITMG G+G+++   +R+  + T+F+ PET +G+  D  ASF+ S LPGY G YL LT + + G + +  G+ATH+      P +E+R+ +L T D S I  ++ ++ +  S    +    + + I+KCF  +   +II AL+  A+  S+   + +  V+ L   SP S+ VT
Sbjct:  115 SGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHFVPKHMFPHLEDRLAELNTSDISKINNTILEFAEFASSSPPTFTPDVMDVINKCFCKNDTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVT 334          
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.298e-31
Identity = 79/226 (34.96%), Postives = 129/226 (57.08%), Query Frame = 3
Query:    3 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRES---VLRKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSYEK 671
            +GGD+ A+ +    G     + FF   Y      GT+ KP+VA+++GITMG G G+S+ G +RV T+KT+F+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+  + ++  +E+ +  L +   S +   L  Y +   LD E    +  + E ID+ FS  ++EEI++ L+ + ++    +  K  E L + SP SLK+T +  E+
Sbjct:   92 AGGDIRAIAEAGKAGNLLS-QVFFREEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQFRVATEKTLFAMPETGIGLFPDVGGGYFLPRLQGKLGLFLALTGFRLKGRDVQRVGVATHFVQSEKIESLEKDLVDLKSPSISDVAQLLDSYQEQSHLDAEKPFVLQEQTEAIDRLFSAGSVEEIVENLKKDGSA----FALKQAETLAKMSPTSLKLTFRQIEE 312          
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.180e-30
Identity = 78/222 (35.14%), Postives = 127/222 (57.21%), Query Frame = 3
Query:    3 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDK---CFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQ 659
            +GGD+  + +   + K +    FF   Y      G+  KP+VA++ GITMG G G+S+ G +RV T+K +F+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+  + +L ++EE +  L +     I + L  Y     +DR+      E +DK   CFS +T+EEII+ L+ + +S    +  + ++ + + SP SLK+TL+
Sbjct:   96 AGGDIRVISEA-EKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSS----FALEQLKVINKMSPTSLKITLR 312          
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 79/231 (34.20%), Postives = 131/231 (56.71%), Query Frame = 3
Query:    3 SGGDVIALYQLLNEGKFED--FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGD--LVSLDRESVLRK-IETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSYEKVDS 680
            +GGD+ A+    + GK  D   ++FF   Y      GT+ KP+VA++DGITMG G G+S+ G +RV ++ T+F+ PET +G  PD G  ++L  LPG LG YLALTG +L G ++   G+ATH+  + ++P +E+ +  +       +   L  Y +    + D+  VL + ++ I+  FS  ++E II+ L  + +S    +  K ++ L   SP SLK+T +  ++  S
Sbjct:   95 AGGDIRAV---TDAGKAGDRLAQDFFREEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENTLFAMPETAIGLFPDVGGGYFLPRLPGKLGLYLALTGFRLKGSDVQKAGIATHFVESEKIPSLEQDLVAMKCPSKENVADVLDSYHNKSYAAQDKPFVLAEHLDKINSLFSASSVEAIIENLRCDGSS----FALKQLQTLSTMSPTSLKITFRQLKEGSS 318          
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.959e-29
Identity = 79/228 (34.65%), Postives = 130/228 (57.02%), Query Frame = 3
Query:    3 SGGDVIALYQLLNEGKFED--FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQY--GDLVSLDRESVL-RKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSYEK 671
            +GGD+ A+    + GK  D   ++FF   Y      GT  KP+VA++DGITMG G G+S+ G +RV ++KT+F+ PET +G  PD G  ++L  L G LG YLALTG +L G ++   G+ATH+  + +L  +E+ +  + +     +   L  Y      + D+  VL   ++ I+  FS +T+EEI++ L+ + +S    +  K ++ L   SP SLK+T +  ++
Sbjct:   95 AGGDIRAV---TDAGKVGDRLAQDFFREEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKTLFAMPETAIGLFPDVGGGYFLPRLTGKLGLYLALTGFRLKGSDVQKAGIATHFVESEKLSSLEQDLVAMKSPSKENVADVLDSYQKKSYAAQDKPFVLAENMDKINSLFSGNTVEEIMENLKCDGSS----FAMKQLQTLSTMSPTSLKITFRQLKE 315          
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.959e-29
Identity = 77/226 (34.07%), Postives = 132/226 (58.41%), Query Frame = 3
Query:    3 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFV----KPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVL---RKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQ 659
            +GGD+ AL    +E K +  +N  + L++  Y+    +    KP+VA++DGITMG G G+S+ G +RV T++++F+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+  + +L ++EE +  L +     +   L  Y     +D++  +     ++ I+ CFS +T+E+II+ L  +  S + +   K + K+   SP SLK+TL+
Sbjct:   95 AGGDIKAL----SEAK-KARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGYRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKMDQDKSIIFEEHMDKINSCFSANTVEQIIENLRQD-GSPFAIEQMKVINKM---SPTSLKITLR 311          
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.458e-29
Identity = 76/226 (33.63%), Postives = 127/226 (56.19%), Query Frame = 3
Query:    3 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFV----KPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKC---FSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQ 659
            +GGD+ AL +  N  +        + L++  Y+    +    KP++A++ GITMG G G+S+ G +RV T+K+VF+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+    +L ++EE +  L +     I   L  Y      D++      E +DK    FS +T+E+I+D L+ + +S    +  + ++ +K+ SP SLK+TL+
Sbjct:   96 AGGDIRALSEARNTNQ-----KMLQDLFREEYILNNAIDSCQKPYIALIHGITMGGGVGVSVHGQFRVATEKSVFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYTAGIATHFVDFEKLGMLEEDLLALKSPSKENIADVLETYHAKSKTDQDKPFILEEHMDKINSWFSANTVEQIVDNLQQDGSS----FALEQLKVIKKMSPTSLKITLR 312          
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.161e-28
Identity = 70/222 (31.53%), Postives = 126/222 (56.76%), Query Frame = 3
Query:    3 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVL---RKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQ 659
            +GGD+ AL +    G+    ++ F   Y       +  KP+VA++DGITMG G G+S+ G +RV T++++F+ PET +G  PD G  ++L  L G LG +LALTG +L G ++   G+ATH+  + +L ++EE +  L +     +   L  Y     + ++  +     ++ I+ CFS +T+E+I++ L  + +     +  + ++ + + SP SLK+TL+
Sbjct:   95 AGGDIKALSEAKKAGQTLS-QDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVHRAGIATHFVDSEKLHVLEEELLALKSPSAEDVAGVLESYHAKSKMGQDKSIIFEEHMDKINSCFSANTVEQILENLRQDGSP----FAMEQIKVINKMSPTSLKITLR 311          
BLAST of FC921474 vs. ExPASy Swiss-Prot
Match: HIBCH_DICDI (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Dictyostelium discoideum GN=hibch PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.721e-27
Identity = 77/229 (33.62%), Postives = 116/229 (50.66%), Query Frame = 3
Query:    3 SGGDVIALYQL--LNE---GKFEDFKN-FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGRLPLVEERVGKLITDDPSIIETSLAQYGDLVSLDRESVLRKIETIDKCFSHDTIEEIIDALENEAASSYDVWCRKAVEKLKEASPLSLKVTLQSYEK 671
            +GGD+ A+Y    LNE    K  D  + FF   Y    L GT     V+I +G  MG G G+S+ G +RV T+ TVF+ PET +GF  D G S++L  LP   G YLALTG KL G  +   G+ATH+  N  +  +E+ + +        I + L +Y D            +  I++ F  ++++EI + LE    S    W ++ ++ LK  SP SL V  +  ++
Sbjct:   84 AGGDIRAIYDYKQLNEEQKSKTNDIGDLFFREEYILNNLIGTNPIAQVSIYNGFAMGGGIGLSVHGKFRVATENTVFAMPETGIGFFCDVGGSYFLPRLPNNYGMYLALTGSKLKGNNVYLAGVATHFVSNEHIQALEKEIEECENPTSQTINSILTKYHDKSKSTSNEYNDNLGDIERIFGKNSVKEIFEQLELLENSE---WAKQTLKTLKSVSPSSLMVVFEQMKQ 309          
The following BLAST results are available for this feature:
BLAST of FC921474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HIBCH_CHICK2.809e-3236.613-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO1.068e-3133.183-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DANRE5.298e-3134.963-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_HUMAN1.180e-3035.143-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR2.226e-2934.203-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA4.959e-2934.653-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE4.959e-2934.073-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN8.458e-2933.633-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT7.161e-2831.533-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_DICDI2.721e-2733.623-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC32105D05EF RVDevelopN Citrus clementina cDNA clone C32105D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921474 ID=FC921474; Name=FC921474; organism=Citrus clementina; type=EST; length=681bp
GCTCTGGTGGGGATGTCATCGCTCTTTATCAGTTACTTAATGAAGGAAAA
TTTGAAGACTTTAAAAATTTTTTTGAGACGTTATATCAGTTTGTATACCT
TCAAGGAACATTTGTAAAGCCACATGTGGCTATATTGGATGGTATCACAA
TGGGATGTGGAGCTGGGATTTCGCTGCAGGGGATGTATCGTGTGGTCACT
GATAAAACTGTTTTTTCTAATCCAGAGACTCAAATGGGGTTCCATCCCGA
TGCAGGGGCTTCGTTTTATCTGTCTCACCTGCCTGGTTACTTAGGAGAGT
ACTTGGCTCTAACTGGAGAAAAGCTCAATGGTGTAGAAATGATTGCTTGT
GGTCTTGCCACCCATTATACGTTAAATGGGAGACTTCCACTGGTTGAGGA
ACGAGTTGGAAAATTAATCACAGATGATCCTTCAATCATAGAGACTTCTC
TTGCTCAATATGGTGACCTTGTCTCTCTAGATAGGGAGAGTGTTCTTCGC
AAGATTGAGACAATTGATAAATGTTTCAGTCATGACACAATCGAGGAAAT
TATTGATGCTTTGGAAAATGAGGCAGCTTCCTCTTATGATGTATGGTGCA
GAAAAGCTGTTGAAAAACTGAAAGAGGCATCTCCATTGAGCTTGAAAGTT
ACTTTACAATCATACGAGAAGGTAGATTCCA
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