FC921477

Overview
NameFC921477
Unique NameFC921477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC921477 vs. ExPASy Swiss-Prot
Match: Y4990_ARATH (Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.829e-82
Identity = 140/204 (68.63%), Postives = 167/204 (81.86%), Query Frame = 3 
Query:  105 NESSKTDEAVRDSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKXXXXXXXXVGMEDKFPGSSLNGAVMAF 716
            N+     E  ++ ++ +  +E + H+YADG +WGYYPG+ P LSFS+FMD+FFRK KC MRVFMVWNSP WM+SVRHQRGLES+L  HRDACVVVFSET+ELDFF++SFVKD +KVAVAMPNLDELL+DTP H FASVWF+WRKTKFY THYSELVRLAALYKYGG+Y+DSD+IVL         +GMED+  G SLNGAVM+F
Sbjct:  311 NDEKIEREEQKNVESERKHDEVTEHMYADGTKWGYYPGIEPSLSFSDFMDSFFRKEKCSMRVFMVWNSPGWMFSVRHQRGLESLLSQHRDACVVVFSETVELDFFRNSFVKDSYKVAVAMPNLDELLQDTPTHVFASVWFDWRKTKFYPTHYSELVRLAALYKYGGVYLDSDVIVLGSLSSLRNTIGMEDQVAGESLNGAVMSF 514
The following BLAST results are available for this feature:
BLAST of FC921477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4990_ARATH5.829e-8268.63Uncharacterized protein At4g19900 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32105D08EF RVDevelopN Citrus clementina cDNA clone C32105D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921477 ID=FC921477; Name=FC921477; organism=Citrus clementina; type=EST; length=737bp
TCGCCGGGGAGGAGCATGTAAAAGATGAGAGTAGCGGCAATGCTACTGGT
GAATTATATGATAAGGAGGTAAATGACTCTAACAAGTATCTGAGTGCAAG
AGGAAATGAGAGTTCTAAGACTGATGAGGCAGTCAGAGATTCTAAGGCTT
ATCAGAGTAAGAATGAGTTTTCAAGTCACATATATGCAGATGGAAAGAGA
TGGGGTTACTATCCTGGTTTACATCCTAGACTTTCATTTTCAAATTTTAT
GGATGCATTTTTCAGGAAGGGCAAATGTGATATGCGGGTTTTTATGGTGT
GGAATTCACCTCCTTGGATGTATAGTGTGAGGCATCAAAGGGGACTGGAG
AGTGTGCTTTTCCACCATCGAGATGCTTGTGTTGTGGTGTTTTCTGAGAC
AATTGAGCTCGACTTTTTCAAAGACAGCTTTGTGAAGGATGGTTTTAAAG
TTGCTGTTGCCATGCCGAATCTCGATGAACTACTGAAAGATACACCAGCC
CATGAATTTGCTTCTGTTTGGTTTGAATGGAGAAAGACAAAGTTTTATAA
TACTCACTATAGTGAGCTTGTCCGGCTTGCTGCTCTCTACAAATATGGAG
GTATCTATATGGATTCTGATATTATAGTTCTGAAATCATTGTCTTCACTT
AACAATTCTGTTGGCATGGAGGATAAGTTTCCTGGAAGTTCTTTGAATGG
TGCTGTAATGGCATTTAGAAGCACAGTCCTTTCATAT
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