FC921480

Overview
NameFC921480
Unique NameFC921480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14318 contig Ccv1_Contig14318:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.341e-37
Identity = 75/138 (54.35%), Postives = 98/138 (71.01%), Query Frame = 1
Query:  256 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            +GFLGLG+MG  +  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y++MSTVD ET  ++S+ ITS+GG FLEAPVSGS+Q +  G LVI++AG+R
Sbjct:  178 IGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDR 315          
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.190e-36
Identity = 75/139 (53.96%), Postives = 98/139 (70.50%), Query Frame = 1
Query:  253 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   +ADP AA  +V    GVL+ I PGK Y+DMSTVD ET  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++
Sbjct:  250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQ 388          
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 1
Query:  253 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG+R
Sbjct:  268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDR 406          
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 1
Query:  253 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG+R
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDR 407          
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 1
Query:  253 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG+R
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDR 407          
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 1
Query:  253 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG+R
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDR 407          
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.999e-35
Identity = 72/139 (51.80%), Postives = 97/139 (69.78%), Query Frame = 1
Query:  253 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            ++GFLGLG+MG  I  NLL+ G  VTVW+RT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I P K Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG+R
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDR 407          
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 72/139 (51.80%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  253 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  K       GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG+R
Sbjct:  268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDR 400          
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.839e-30
Identity = 67/140 (47.86%), Postives = 90/140 (64.29%), Query Frame = 1
Query:  250 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            ++ GFLGLGIMG  +  NLL +G  V VWNRT +KC +    GA V  +P++VI+   +T   +ADP  A  +VF   GV+     GKGY++M+ VD ETS  I+  I +KGG +LEA + GSK  AE G L+IL+AGER
Sbjct:  274 LKFGFLGLGIMGCGMVKNLLNSGHSVVVWNRTATKCRKFQEAGAEVADTPSDVIEMTDVTFSCVADPQVAKELVFGNCGVMSANLVGKGYVEMTGVDPETSHDIAEQIIAKGGRYLEAQIQGSKNQAEEGTLIILAAGER 413          
BLAST of FC921480 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 131.339 bits (329), Expect = 4.842e-30
Identity = 68/161 (42.24%), Postives = 99/161 (61.49%), Query Frame = 1
Query:  187 VDLKSGKNLEHRGGRY*KNKKMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGER 669
            +D+ S  N      R  K  +++ GFLGLG+MG  I  NL+++G  V VWNR+  KC +    GA V  +P++V++   +T   ++DP  A  +VF   GV+     GKGY++M+ VD ETS  I+ AI SKGG +LEA + GSK  AE G L+IL++G+R
Sbjct:  262 IDMSSVSNAVQ--SRNIKASQLKFGFLGLGVMGCGIVKNLIKSGHSVVVWNRSAHKCRKFQEVGAEVADTPSDVVEMTDVTYSCVSDPQVAKDMVFGNCGVMSANLAGKGYVEMTGVDPETSNDINEAIISKGGRYLEAQIQGSKNQAEEGTLIILASGDR 420          
The following BLAST results are available for this feature:
BLAST of FC921480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GLYR1_DANRE5.341e-3754.35Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_XENTR1.190e-3653.96Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_RAT1.554e-3653.24Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_HUMAN1.554e-3653.24Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_CHICK1.554e-3653.24Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_BOVIN1.554e-3653.24Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_PONAB4.999e-3551.80Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLYR1_MOUSE6.111e-3351.80Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
GLYR1_AEDAE2.839e-3047.86Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]
GLYR1_ANOGA4.842e-3042.24Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]

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Properties
Property NameValue
Genbank descriptionC32105D11EF RVDevelopN Citrus clementina cDNA clone C32105D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921480 ID=FC921480; Name=FC921480; organism=Citrus clementina; type=EST; length=707bp
GGAAAGAGATATTGCCACAATATCTTTCACTTGAAATTTAGTATTCCATT
AAAGCTGATAATGATATTTTGATTGTATAATACATTTTTCTGTTGTTTAA
TATAAAATGACAATGATATAGATCGTATCAAGGATTAAAGATTCTTGCTT
TATGTAAGTTTGGACTCTGCTGAGAGTTGCAAGTAAGTAGATCTGAAAAG
CGGAAAAAATTTAGAACACAGAGGAGGAAGATATTGAAAAAACAAGAAAA
TGGAAGTGGGGTTTCTGGGTTTAGGAATTATGGGCAAGGCCATTTCTATG
AACTTGCTTAGAAATGGATTCAAAGTTACTGTATGGAACAGGACTCTCTC
TAAGTGTGATGAACTCGTGGCACACGGTGCTACAGTTGGAGGAAGTCCAG
CAGAAGTAATTAAAAAGTGTACGATTACTATTGGGATGTTAGCTGATCCT
GCGGCTGCACTTTCGGTTGTCTTTGACAAAGGTGGTGTTTTGGAGCAAAT
TTGTCCTGGGAAAGGTTACATTGACATGTCAACAGTTGATCATGAAACTT
CAATAAAGATCAGCCGGGCAATTACATCAAAAGGCGGTCACTTCCTTGAA
GCTCCAGTTTCAGGTAGCAAGCAGCCTGCAGAAACTGGTCAACTAGTAAT
CCTTTCTGCTGGGGAGAGGCACTCTATGATGAAGCATTTCAGCTCTCATG
TAATTGG
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