FC921496

Overview
NameFC921496
Unique NameFC921496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14323 contig Ccv1_Contig14323:1..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921496 vs. ExPASy Swiss-Prot
Match: GOS11_ARATH (Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.579e-69
Identity = 134/159 (84.28%), Postives = 144/159 (90.57%), Query Frame = 3
Query:  207 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGIDWLLKQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHATINRSTGQMDSVISQAQA 683
            MDVPSSWDALRKQARK+EAQLDEQMHSYR+LVS+K  +K D  E+DLE+GID LL+QLQQVN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  INR+T QMD VISQAQA
Sbjct:    1 MDVPSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQVNAQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGINRNTAQMDGVISQAQA 158          
BLAST of FC921496 vs. ExPASy Swiss-Prot
Match: GOS12_ARATH (Golgi SNARE 12 protein OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  201 SAMDVPSS-WDALRKQARKLEAQLDEQMHSYRKLVS--------SKGSTKVDAAEN--DLESGIDWLLKQLQQVNIQMQDWVSSGG-SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHATINRSTGQMDSVISQAQA 683
            S++D+  S W+ LR++ARK+E  LD ++ SY KL +          GS  V +  +   +E  I  LL++L  +N  M    +S   +  V+  L RH++IL + TQEF R++ ++ + +EHA LL   R  D        G  SP   +L+E A+I+ S   +D VI QAQA
Sbjct:    4 SSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRDILHEYTQEFRRIKGNINSLREHAELLSSVR--DDISEYKASGSMSPGVQVLRERASIHGSISHIDDVIGQAQA 174          
BLAST of FC921496 vs. ExPASy Swiss-Prot
Match: GOSR1_HUMAN (Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 57/186 (30.65%), Postives = 88/186 (47.31%), Query Frame = 3
Query:  204 AMDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQA 683
            A    S W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A A
Sbjct:    2 AAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMA 186          
BLAST of FC921496 vs. ExPASy Swiss-Prot
Match: GOSR1_BOVIN (Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 55/179 (30.73%), Postives = 86/179 (48.04%), Query Frame = 3
Query:  225 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQA 683
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      I+ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A A
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMA 186          
BLAST of FC921496 vs. ExPASy Swiss-Prot
Match: GOSR1_CRIGR (Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 55/179 (30.73%), Postives = 86/179 (48.04%), Query Frame = 3
Query:  225 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQA 683
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A A
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMA 186          
BLAST of FC921496 vs. ExPASy Swiss-Prot
Match: GOSR1_RAT (Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 55/179 (30.73%), Postives = 85/179 (47.49%), Query Frame = 3
Query:  225 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------IDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQA 683
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      I+ LL +L  VN +M ++  S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A A
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMA 186          
BLAST of FC921496 vs. ExPASy Swiss-Prot
Match: GOSR1_PONAB (Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 53/177 (29.94%), Postives = 86/177 (48.59%), Query Frame = 3
Query:  225 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAEND-------------------LESGIDWLLKQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQAQA 683
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D                   +   I+ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  + +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS A A
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMSIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMA 184          
The following BLAST results are available for this feature:
BLAST of FC921496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GOS11_ARATH9.579e-6984.28Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=... [more]
GOS12_ARATH3.233e-1634.68Golgi SNARE 12 protein OS=Arabidopsis thaliana GN=... [more]
GOSR1_HUMAN3.699e-1230.65Golgi SNAP receptor complex member 1 OS=Homo sapie... [more]
GOSR1_BOVIN6.310e-1230.73Golgi SNAP receptor complex member 1 OS=Bos taurus... [more]
GOSR1_CRIGR1.406e-1130.73Golgi SNAP receptor complex member 1 OS=Cricetulus... [more]
GOSR1_RAT2.398e-1130.73Golgi SNAP receptor complex member 1 OS=Rattus nor... [more]
GOSR1_PONAB2.398e-1129.94Golgi SNAP receptor complex member 1 OS=Pongo abel... [more]
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Properties
Property NameValue
Genbank descriptionC32105F05EF RVDevelopN Citrus clementina cDNA clone C32105F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921496 ID=FC921496; Name=FC921496; organism=Citrus clementina; type=EST; length=734bp
AAATTTAAAAAAAATTCAAAAATTGACCAGTTTTTGGTCATTTTGCCGGT
GTGAGCAGACAATCTGTCCTCGTCTCCAAACAAACGTTATTATATTTAAT
CAACCAACGTATACGAAAGAAATTGAATAAAATCACGCAATTGAATTGAA
GATCAATTTTTAATTTCATTTTTGGTTGACAGATCGATCTGGATTTGGTT
TCAGCGATGGATGTGCCTAGCTCATGGGACGCTTTACGCAAACAGGCGAG
AAAGCTGGAAGCACAGTTGGATGAGCAGATGCATTCCTATCGTAAGTTGG
TTTCCTCTAAGGGTTCTACAAAGGTTGACGCCGCAGAGAATGATCTTGAA
TCTGGGATAGATTGGTTGCTGAAACAGCTACAACAAGTAAATATACAAAT
GCAAGATTGGGTATCGTCAGGAGGATCCGAAATGGTTTCACATACTTTGA
CTCGTCATCAGGAAATTCTTCAAGATCTTACTCAGGAGTTTTATCGTCTC
CGCTCCAGCCTTAAAGCTAAGCAAGAGCATGCTTCGCTACTTGAGGACTT
TAGGGAGTTTGATCGGACCAGATTAGATTTAGAAGATGGTGTTGGTTCTC
CAGAGCAAGCTTTACTTAAAGAACACGCGACTATTAATCGAAGTACAGGA
CAGATGGATTCTGTGATTTCTCAAGCTCAAGCACTCTCGGTGCTCTGGCC
TTTCACGTTNCACATTGGGGGCATCATTCAAGCT
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