FC921508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921508 vs. ExPASy Swiss-Prot
Match: EXOS1_HUMAN (3'-5' exoribonuclease CSL4 homolog OS=Homo sapiens GN=EXOSC1 PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.483e-34 Identity = 83/186 (44.62%), Postives = 113/186 (60.75%), Query Frame = 3 Query: 123 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQNRARKVAKVR 677 PGE L E G G Y +G +++SL G L S P V V +P+ G++V +V+ + +R A I+ VG+ ++ F G IR++DVRATE DKV+++ SFRPGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T RKVA+V+ Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKSS----ENGALPVVSVVRETESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQ 189
BLAST of FC921508 vs. ExPASy Swiss-Prot
Match: EXOS1_MOUSE (3'-5' exoribonuclease CSL4 homolog OS=Mus musculus GN=Exosc1 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34 Identity = 83/186 (44.62%), Postives = 113/186 (60.75%), Query Frame = 3 Query: 123 PGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQNRARKVAKVR 677 PGE L E G G Y +G +++SL G L S P V V +P+ G+VV +V+ + +R A I+ VG+ ++ F G IR++D+RATE DKV+++ SFRPGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G MVPISW EMQCP T RKVA+V+ Sbjct: 10 PGERLCNLEEGSPGSGTYT--RHGYIFSSLAGCLMKTS----ENGAVPVVSVMRETESQLLPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFRKVARVQ 189
BLAST of FC921508 vs. ExPASy Swiss-Prot
Match: CSL4_SCHPO (Exosome complex component csl4 OS=Schizosaccharomyces pombe GN=csl4 PE=2 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26 Identity = 74/187 (39.57%), Postives = 107/187 (57.22%), Query Frame = 3 Query: 114 LVTPGEVLGKATEVKAGKGAYVAKHNGLVYASLTGLLRTLSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST-AGGTMVPISWTEMQCPLTGQNRARKVAK 671 LV PG+V+ + A G K + ++ TG+ P +S VE T +P GS+V+ARV+++ R A+ +I V +++F G+I QD+RATE +KV + SFRPGDIVRA V+SLGD +YFL+TA+NDLGV+ A+S+ G M P+ + MQ +G RK AK Sbjct: 3 LVLPGQVVARG----APNGEGTVKRGDYIISTRTGIF---DPEKNSVTYPRKVEETA-----VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFRPGDIVRALVISLGDGSSYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTK-SGYTEMRKCAK 176
BLAST of FC921508 vs. ExPASy Swiss-Prot
Match: CSL4_YEAST (Exosome complex component CSL4 OS=Saccharomyces cerevisiae GN=CSL4 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21 Identity = 64/179 (35.75%), Postives = 88/179 (49.16%), Query Frame = 3 Query: 243 PDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAK----------------------------------SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST--AGGTMVPISWTEMQCPLTGQNRARKVAK 671 P + R T + + +P+ G +V+ RVT++ + A+ +I+ V K + E F GIIR QDVR+T+ D+V + F+PGDIVRA VLSLGD Y+L+TA+NDLGVV A + AGG M W M P+TG RK AK Sbjct: 112 PGTEKGRKTNKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGIGSNGSGIVAAGGGSGAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAK 290 The following BLAST results are available for this feature:
BLAST of FC921508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921508 ID=FC921508; Name=FC921508; organism=Citrus clementina; type=EST; length=727bpback to top |