FC921511

Overview
NameFC921511
Unique NameFC921511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14247 contig Ccv1_Contig14247:2..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.134e-31
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MGI+FTR+FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 69
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.134e-31
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MGI+FTR+FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 69
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG  F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLG
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 69
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG  F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLG
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 69
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG  F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLG
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 69
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG  F+ +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLG
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 69
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 49/69 (71.01%), Postives = 63/69 (91.30%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG+ F++LFS+LFG+KE RIL++GLD AGKTT+LY+L++GEVV+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 49/69 (71.01%), Postives = 62/69 (89.86%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG+  ++LFS+LFGNKE RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVETVQY NI F VWD+G
Sbjct:    1 MGLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVG 69
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 49/69 (71.01%), Postives = 62/69 (89.86%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG+  ++LFS+LFGNKE RIL++GLD AGKTT+LY+L++GEV++TIPTIGFNVETVQY NI F VWD+G
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVG 69
[Close]
BLAST of FC921511 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 2 
Query:  224 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 430
            MG+ FT+LFS LF  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+G
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
The following BLAST results are available for this feature:
BLAST of FC921511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
ARF3_ARATH1.134e-3195.65ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP1.134e-3195.65ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARL1_RAT7.869e-2578.26ADP-ribosylation factor-like protein 1 OS=Rattus n... [more]
ARL1_MOUSE7.869e-2578.26ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARL1_HUMAN7.869e-2578.26ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN7.869e-2578.26ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARF_ASHGO8.700e-2471.01ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF1_YEAST1.136e-2371.01ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF2_YEAST1.484e-2371.01ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF_VIGUN7.365e-2371.01ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]

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Properties
Property NameValue
Genbank descriptionC32105G09EF RVDevelopN Citrus clementina cDNA clone C32105G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921511 ID=FC921511; Name=FC921511; organism=Citrus clementina; type=EST; length=702bp
GAGAACAGTTTTGTAATAACAACAATTAAACAAACCCCCCAAAACTTTCA
TCTTTTTTATTTTTTCATAACTCAAAAGTCTCAACAAATCTCGCAAGCAG
ACCCTCTTCCTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGAT
CCAATACATAATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATC
ACTAAGAATACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTC
TCTTCGCTCTTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGA
CAATGCTGGCAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTG
TGTCAACTATTCCAACTATTGGATTTAATGTGGAGACAGTACAATATAAT
AACATCAAATTCCAAGTCTGGGATCTTGGTATGTCAGTATGCTTCCTTTG
ATCAGTATTTGCAACCTGCATTATCGACTTTTTGTTAAATTGATATCAAT
GTGGATTATTAACTGCATTTCTCTCCTTGGAACCATACGTTGTTTTACTC
TTGCTAATCTGCAATAAGAATCATGCTCATCTATGCATTTGCACCTGCAC
GACACTTGTGGACGGTATGATGCGAGTCCCACATGTGTTGATGACTAGAT
CTATGCAATTCAAGCAATGTATCATCTGAAGAAAGGTCTGATNCTGCCCT
AT
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