FC921513
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA5_ARATH (Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 6.902e-74 Identity = 131/177 (74.01%), Postives = 158/177 (89.27%), Query Frame = 3 Query: 162 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 +R+VGL+YDE MCKH+TPDG+ HPE P+RI+ IW KLQ AG+ +RCVVL S +A+DK+L VHT++HVNL+K+IS+KQ D RR+RIAS+LNSIYLN GSSEAAYLAAGSV+++AE+VAEGEL+ FAIVRPPGHHAE DEAMGFCL+NNVAVA SFLLNERP+LG+ KILIVDWDVH Sbjct: 24 QRKVGLIYDETMCKHDTPDGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNGGSSEAAYLAAGSVVKLAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVH 200
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA18_ARATH (Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 3.001e-69 Identity = 126/186 (67.74%), Postives = 157/186 (84.41%), Query Frame = 3 Query: 144 GEGRTI---KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 G+G+ +R+VGL+YDE MCKH+TP+G E P+RI+ IW KLQ AG+ +RCVVL +A+DK+L VHT+ HVNL+K+IS+K+ DSRR++IAS+L+SIYLN GSSEAAYLAAGSV++VAE+VAEGEL+ FAIVRPPGHHAE DEAMGFCL+NNVAVA SFLLNERP+L + KILIVDWD+H Sbjct: 48 GDGKVAGKSQRKVGLVYDETMCKHDTPNGKVDVECPDRIRVIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNLVKSISTKKKDSRRNKIASQLDSIYLNGGSSEAAYLAAGSVVKVAEKVAEGELDCGFAIVRPPGHHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIH 233
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30 Identity = 76/186 (40.86%), Postives = 110/186 (59.14%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 GL+YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS + +L ++I+ SS AA LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VAVA L + L ++KILIVDWDVH Sbjct: 652 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLNVSKILIVDWDVH 834
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30 Identity = 75/186 (40.32%), Postives = 110/186 (59.14%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 GL+YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS + +L ++I+ SS AA LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VA+A L + L ++KILIVDWDVH Sbjct: 653 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVH 835
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC7_HUMAN (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30 Identity = 79/199 (39.70%), Postives = 110/199 (55.28%), Query Frame = 3 Query: 153 RTIKRRVGLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKL-----------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 RT+ GL+YD M KH GD HPE+ RI++IW++LQ G+ +C L ++A + L SVH+E HV L + ++A L ++I+ SS AA AAGSV ++A +VA EL + FA+VRPPGHHA+ AMGFC +N+VA+A L + + +KILIVDWDVH Sbjct: 514 RTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQL---QQQSKASKILIVDWDVH 709
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30 Identity = 78/193 (40.41%), Postives = 113/193 (58.55%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 GL+YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS++ + L S+++ NE SS AA LA G VIE+ +VA GEL + FA+VRPPGHHAE MGFC +N+VA+A L + L ++KILIVDWDVH Sbjct: 651 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVH 838
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3) HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29 Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 GL+YD M KH G HPE+ RI++IW++LQ G+ +C + ++A + L +VH+E H L ++ ++ DS++ + L S+++ NE S+ AA LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VAVA L + L ++KILIVDWDVH Sbjct: 655 GLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLSVSKILIVDWDVH 842
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC5_MOUSE (Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29 Identity = 73/212 (34.43%), Postives = 120/212 (56.60%), Query Frame = 3 Query: 120 PASMEVKSGEGRTIKR--RVGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 P SM+ + + +K G++YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ L + +L + K+LIVDWD+H Sbjct: 655 PGSMKSPTDQPTVVKHLFTTGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLGKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLSVGKVLIVDWDIH 863
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29 Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSR------RDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 G+ YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + + VH+E+H L + ++ D R + S L ++I+ SS AA +A G VIE+A +VA GEL + FA+VRPPGHHAE AMGFC +N+VA+ +L R +L I+KILIVD DVH Sbjct: 634 GIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGHHAEESTAMGFCFFNSVAITAKYL---RDQLNISKILIVDLDVH 822
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC5_CRIGR (Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28 Identity = 72/210 (34.29%), Postives = 117/210 (55.71%), Query Frame = 3 Query: 120 PASMEVKSGEGRTIKRRVGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 P SM+ + G++YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ L + +L + K+LIVDWD+H Sbjct: 655 PGSMKSPPDQPTKHLFTTGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIH 861 The following BLAST results are available for this feature:
BLAST of FC921513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921513 ID=FC921513; Name=FC921513; organism=Citrus clementina; type=EST; length=696bpback to top |