FC921513

Overview
NameFC921513
Unique NameFC921513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921513_ssr113 microsatellite FC921513_ssr113:113..124. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14327 contig Ccv1_Contig14327:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA5_ARATH (Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.902e-74
Identity = 131/177 (74.01%), Postives = 158/177 (89.27%), Query Frame = 3
Query:  162 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            +R+VGL+YDE MCKH+TPDG+ HPE P+RI+ IW KLQ AG+ +RCVVL S +A+DK+L  VHT++HVNL+K+IS+KQ D RR+RIAS+LNSIYLN GSSEAAYLAAGSV+++AE+VAEGEL+  FAIVRPPGHHAE DEAMGFCL+NNVAVA SFLLNERP+LG+ KILIVDWDVH
Sbjct:   24 QRKVGLIYDETMCKHDTPDGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNGGSSEAAYLAAGSVVKLAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVH 200          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA18_ARATH (Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.001e-69
Identity = 126/186 (67.74%), Postives = 157/186 (84.41%), Query Frame = 3
Query:  144 GEGRTI---KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            G+G+     +R+VGL+YDE MCKH+TP+G    E P+RI+ IW KLQ AG+ +RCVVL   +A+DK+L  VHT+ HVNL+K+IS+K+ DSRR++IAS+L+SIYLN GSSEAAYLAAGSV++VAE+VAEGEL+  FAIVRPPGHHAE DEAMGFCL+NNVAVA SFLLNERP+L + KILIVDWD+H
Sbjct:   48 GDGKVAGKSQRKVGLVYDETMCKHDTPNGKVDVECPDRIRVIWEKLQLAGVTQRCVVLGGSKAEDKHLKLVHTKKHVNLVKSISTKKKDSRRNKIASQLDSIYLNGGSSEAAYLAAGSVVKVAEKVAEGELDCGFAIVRPPGHHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIH 233          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.233e-30
Identity = 76/186 (40.86%), Postives = 110/186 (59.14%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            GL+YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS    +  +L         ++I+    SS AA LA G V+E+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VAVA   L   +  L ++KILIVDWDVH
Sbjct:  652 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLNVSKILIVDWDVH 834          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 75/186 (40.32%), Postives = 110/186 (59.14%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            GL+YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS    +  +L         ++I+    SS AA LA G V+E+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VA+A   L   +  L ++KILIVDWDVH
Sbjct:  653 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVH 835          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC7_HUMAN (Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 79/199 (39.70%), Postives = 110/199 (55.28%), Query Frame = 3
Query:  153 RTIKRRVGLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKL-----------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            RT+    GL+YD  M KH    GD   HPE+  RI++IW++LQ  G+  +C  L  ++A  + L SVH+E HV L       +      ++A  L                 ++I+    SS AA  AAGSV ++A +VA  EL + FA+VRPPGHHA+   AMGFC +N+VA+A   L   + +   +KILIVDWDVH
Sbjct:  514 RTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQL---QQQSKASKILIVDWDVH 709          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC4_CHICK (Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 78/193 (40.41%), Postives = 113/193 (58.55%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            GL+YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS++  +   L S+++               NE  SS AA LA G VIE+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VA+A   L   +  L ++KILIVDWDVH
Sbjct:  651 GLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAKLL---QQRLNVSKILIVDWDVH 838          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            GL+YD  M KH    G    HPE+  RI++IW++LQ  G+  +C  +  ++A  + L +VH+E H  L     ++ ++ DS++  +   L S+++               NE  S+ AA LA G V+E+  +VA GEL + FA+VRPPGHHAE    MGFC +N+VAVA   L   +  L ++KILIVDWDVH
Sbjct:  655 GLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKK--LLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLL---QQRLSVSKILIVDWDVH 842          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC5_MOUSE (Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 73/212 (34.43%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  120 PASMEVKSGEGRTIKR--RVGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            P SM+  + +   +K     G++YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A    + +VH+E H  L     ++ ++ DS++    I+ K+             ++++    SS A  +A G ++E+A +VA GEL + FAI+RPPGHHAE   AMGFC +N+VA+    L   + +L + K+LIVDWD+H
Sbjct:  655 PGSMKSPTDQPTVVKHLFTTGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLGKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLSVGKVLIVDWDIH 863          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSR------RDRIASKL---------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            G+ YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A  + +  VH+E+H  L     +  ++ D R        +  S L         ++I+    SS AA +A G VIE+A +VA GEL + FA+VRPPGHHAE   AMGFC +N+VA+   +L   R +L I+KILIVD DVH
Sbjct:  634 GIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGHHAEESTAMGFCFFNSVAITAKYL---RDQLNISKILIVDLDVH 822          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC5_CRIGR (Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 72/210 (34.29%), Postives = 117/210 (55.71%), Query Frame = 3
Query:  120 PASMEVKSGEGRTIKRRVGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            P SM+    +        G++YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A    + +VH+E H  L     ++ ++ DS++    I+ K+             ++++    SS A  +A G ++E+A +VA GEL + FAI+RPPGHHAE   AMGFC +N+VA+    L   + +L + K+LIVDWD+H
Sbjct:  655 PGSMKSPPDQPTKHLFTTGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIH 861          
The following BLAST results are available for this feature:
BLAST of FC921513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
HDA5_ARATH6.902e-7474.01Histone deacetylase 5 OS=Arabidopsis thaliana GN=H... [more]
HDA18_ARATH3.001e-6967.74Histone deacetylase 18 OS=Arabidopsis thaliana GN=... [more]
HDAC4_MOUSE1.233e-3040.86Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=... [more]
HDAC4_RAT1.610e-3040.32Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac... [more]
HDAC7_HUMAN4.684e-3039.70Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=... [more]
HDAC4_CHICK4.684e-3040.41Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE... [more]
HDAC4_HUMAN1.363e-2939.90Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=... [more]
HDAC5_MOUSE3.965e-2934.43Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=... [more]
HDAC9_HUMAN6.763e-2939.58Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=... [more]
HDAC5_CRIGR1.507e-2834.29Histone deacetylase 5 OS=Cricetulus griseus GN=HDA... [more]

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Properties
Property NameValue
Genbank descriptionC32105G12EF RVDevelopN Citrus clementina cDNA clone C32105G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921513 ID=FC921513; Name=FC921513; organism=Citrus clementina; type=EST; length=696bp
GATTATCTCAAAGTACATCAGATCGTCACTTTACTTGAGCGATCTCTCCT
CTCTCTGCAGTATTCACGTTGACGTATACATTCAAAAAATTAAGAATTAC
TAATTAGTGTGGCTGCCTGCCTGCCAGTATGGAGGTGAAATCAGGTGAGG
GCAGGACCATAAAACGACGCGTGGGCCTACTGTACGATGAGAGAATGTGT
AAACATAACACACCTGACGGTGATTATCACCCCGAGAACCCCAACCGCAT
CAAAGCTATTTGGAACAAGCTCCAAGCCGCTGGCATTCCTCGACGGTGTG
TCGTTTTAAATTCCAAAGAAGCGAAAGACAAAAATCTACTGTCTGTGCAC
ACGGAAAATCATGTTAATTTGATTAAGAATATAAGCTCAAAGCAGTTTGA
TTCCCGAAGAGATAGGATTGCGTCAAAATTAAATTCAATTTACTTAAATG
AAGGATCATCGGAGGCTGCTTATCTTGCTGCCGGTTCAGTTATAGAGGTC
GCCGAGAGAGTTGCCGAAGGGGAGTTGAATTCTGCTTTTGCTATTGTGAG
ACCTCCTGGTCATCATGCTGAACCAGATGAAGCTATGGGATTTTGTCTAT
ACAACAATGTGGCTGTTGCTGNCAGTTTCCTATTAAATGAAAGACCAGAA
CTGGGAATCAATAAAATTTTGATTGTTGATTGGGATGTTCACATGG
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