FC921514

Overview
NameFC921514
Unique NameFC921514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14393 contig Ccv1_Contig14393:85..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921514 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 58/103 (56.31%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:  352 DQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYXPVQR 657
            D  ++ GFE P+SP++SY+N+  G ED +++PP VPPHLQ TLL+ PA+  D    LP PQ+VILNHLY++      SVVALG THRF +KYVTVVLY  +QR
Sbjct:  187 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
[Close]
BLAST of FC921514 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:  361 TVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYXPVQR 657
            ++V FE P SPD SY    P  ED A++P AVPP L  TLL    + + + I   PQ+V+LNH++IE    P+S+VALG THRF SKY+TVVLY P+ R
Sbjct:  188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLG---TTEETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283
The following BLAST results are available for this feature:
BLAST of FC921514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KINB2_ARATH5.724e-2556.31SNF1-related protein kinase regulatory subunit bet... [more]
KINB1_ARATH1.320e-2151.52SNF1-related protein kinase regulatory subunit bet... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32105H01EF RVDevelopN Citrus clementina cDNA clone C32105H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921514 ID=FC921514; Name=FC921514; organism=Citrus clementina; type=EST; length=681bp
ACTCTTGCTTGCAATTTGCTCTGCTGCTCTGCTCTTCTCTGGTCACAATA
TATTATATTTTTCTTCGAAATTCCTTTTTTTTCTCTGTTATTTCCCATCA
GTTTCATTCTTTTCCATTTTTTTTTTAATTTTCATTCATGAGAATTTTTC
AATTTCCAAAGATCTTTATGTAGTAAGTAGCCAATTGTATTCTTCTCATT
TCAGGTGGCGGTGAAAGGTTGCGTCTTGGTCATTGAAGAATTTTAGTCTT
AGCTCAGTCGGGGTCAGTTGTGTTGCCTTCTTTCTCTTTTGATGATTTGG
TGCCATTAGGATTTCTCATCCAACATGAACCAATATGATGATGAAAATCA
TGATCAGGCAACAGTAGTTGGATTTGAAGTCCCAAAGTCGCCCGATTCAA
GTTACAACAATGTGTATCCTGGGAACGAGGATGAGGCACGTGACCCTCCT
GCTGTGCCTCCTCATTTGCAACACACATTGCTAAGCTATCCAGCAAGCAG
GGATGCTTCTGGAATTCTTCCTGCACCCCAGAATGTGATTCTAAACCACC
TTTACATTGAGAATCGAGATGTGCCACGTTCTGTGGTGGCACTTGGATTT
ACTCATCGATTCCGTTCCAAGTATGTTACAGTTGTTCTATACNAACCAGT
TCAAAGAAGGGGAAGTACCAGCACCTAATGA
back to top