FC921530

Overview
NameFC921530
Unique NameFC921530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921530_ssr578 microsatellite FC921530_ssr578:578..589. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14329 contig Ccv1_Contig14329:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: STA_RICCO (Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 6.218e-102
Identity = 186/230 (80.87%), Postives = 204/230 (88.70%), Query Frame = 1
Query:    4 KLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            KLE+WGWRLSLGLAAAPAL+MT+GG+LLPETPNSLIE+G  E+GR VLEKIRGTK V+AE+QDM+DASELANSIKHPFRNILE+RNRPQLVMAIFMP FQILTGIN ILFYAP LFQSMGF G+A+LYSSA+TGAVL SST ISIATVD+LGRR LLISGGIQMITCQVIV+IILG+KFG NQ+LSK              LAFGWSWGPLGWTVPSEIFPLETRSAGQ+
Sbjct:  197 KLESWGWRLSLGLAAAPALLMTIGGLLLPETPNSLIEQGLHEKGRNVLEKIRGTKHVDAEFQDMLDASELANSIKHPFRNILEKRNRPQLVMAIFMPTFQILTGINIILFYAPPLFQSMGFGGNAALYSSAVTGAVLCSSTFISIATVDRLGRRFLLISGGIQMITCQVIVAIILGVKFGDNQQLSKSFSVLVVIMICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQS 426          
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.027e-96
Identity = 176/230 (76.52%), Postives = 197/230 (85.65%), Query Frame = 1
Query:    4 KLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            +L+ WGWRLSLGLAA PAL+MT+GG  LPETPNSL+ERG  E GRRVL K+RGT+ VNAE QDMVDASELANSIKHPFRNIL++R+RPQLVMAI MPMFQILTGINSILFYAPVLFQ+MGF G+ASLYSSA+TGAVL  ST ISI  VD+LGRRALLI+GGIQMI CQVIV++ILG+KFG NQELSK              +AFGWSWGPLGWT+PSEIFPLETRSAGQ+
Sbjct:  197 QLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLTERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQS 426          
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 6.065e-73
Identity = 132/227 (58.15%), Postives = 170/227 (74.89%), Query Frame = 1
Query:   16 WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKF-GPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            WGWRLSLGLA  PAL++TVG +L+ ETPNSL+ERG+ +EG+ VL +IRGT  V  E+ D+++AS LA  +KHPFRN+L+RRNRPQLV+A+ + +FQ  TGIN+I+FYAPVLF ++GF  DASLYS+ +TGAV   STL+SI +VDK+GRR LL+  G+QM   QV+++IILG+K    +  LSK               AF WSWGPLGW +PSE FPLETRSAGQ+
Sbjct:  200 WGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKAVLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQS 426          
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: STP14_ARATH (Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.157e-70
Identity = 128/231 (55.41%), Postives = 170/231 (73.59%), Query Frame = 1
Query:    4 KLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVM-AIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            ++  WGWRLSLGLA  PA++M +GG++LPETPNSL+E+GK E+ + VL K+RGT  + AE+QD+V+AS+ A ++K+PFRN+L RRNRPQLV+ AI +P FQ LTG+NSILFYAPV+FQS+GF G ASL SS +T A L  + ++S+ + DK GRR LL+   ++M    V+V + L LKFG  +EL K              LA+G SWGP+GW VPSE+FPLETRSAGQ+
Sbjct:  197 QIHPWGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGKLEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSLGFGGSASLISSTITNAALVVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKFGEGKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQS 427          
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.654e-65
Identity = 121/229 (52.84%), Postives = 160/229 (69.87%), Query Frame = 1
Query:   16 WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPN---QELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            WGWRLSLG A  PAL++T+G ++LP+TPNS+IERG+ EE +  L +IRG  +V+ E+ D+V AS+ + SI+HP+RN+L R+ RP L MA+ +P FQ LTGIN I+FYAPVLF ++GF  DASL S+ +TG+V  ++TL+SI  VD+ GRR L + GG QM+ CQ +V+  +G KFG +    EL K                F WSWGPLGW VPSEIFPLE RSA Q+
Sbjct:  199 WGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQS 427          
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.037e-64
Identity = 124/227 (54.63%), Postives = 155/227 (68.28%), Query Frame = 1
Query:   19 GWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQE--LSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            GWRLSLGLA  PA+MM VG   LP+TPNS++ERG KE+ + +L+KIRGT EV  E+ ++ +A E A  +KHP+ NI++ R RPQL    F+P FQ LTGIN I+FYAPVLF+++GF  DASL S+ +TG V   ST++SI +VDK GRRAL + GG QMI  Q+ V  ++G KFG N E  LS                 F WSWGPLGW VPSEI PLE RSAGQ+
Sbjct:  202 GWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNKEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQS 428          
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.940e-64
Identity = 118/227 (51.98%), Postives = 155/227 (68.28%), Query Frame = 1
Query:   19 GWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFG--PNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            GWR+SLGLA  PA+M+ +G ++LP+TPNSLIERG  EE + +L+ IRGT EV+ E+QD++DASE +  +KHP++NI+  R RPQL+M  F+P FQ LTGIN I FYAPVLFQ++GF   ASL S+ +TG +    T +S+ TVD+ GRR L + GGIQM+  Q+ +  ++G+KFG      + K                F WSWGPLGW VPSEI PLE RSA QA
Sbjct:  199 GWRISLGLACVPAVMIMIGALILPDTPNSLIERGYTEEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQA 425          
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.940e-64
Identity = 120/229 (52.40%), Postives = 161/229 (70.31%), Query Frame = 1
Query:   16 WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPN---QELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            WGWRLSLG A  PAL++TVG ++LP+TPNS+IERG+ EE R  L+++RG ++V+ E+ D+V ASE +  ++HP+RN+L+R+ RP L MAI +P FQ LTGIN I+FYAPVLF ++GF  DA+L S+ +TG V   +T++SI  VDK GRR L + GG+QM+ CQ IV+  +G KFG +    +L +                F WSWGPLGW VPSEIFPLE RSA Q+
Sbjct:  201 WGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQHEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTGINVIMFYAPVLFDTIGFGSDAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIFPLEIRSAAQS 429          
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.554e-63
Identity = 117/227 (51.54%), Postives = 158/227 (69.60%), Query Frame = 1
Query:   16 WGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEE-GRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            WGWR+SL +AA PA ++T G + LPETPNSLI+R    E  + +L+++RGT +V AE  D++ AS ++ +I+HPF+NI+ R+ RPQLVMA+ +P FQ +TGIN I FYAP+LF+++G +  ASL SS +TG V ++ST IS+  VDKLGRRAL I GG+QM   Q++V  I+  + G +  + K                FGWSWGPLGW VPSEIFPLE RSAGQ+
Sbjct:  198 WGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLLSSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQS 424          
BLAST of FC921530 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.291e-62
Identity = 114/233 (48.93%), Postives = 158/233 (67.81%), Query Frame = 1
Query:    1 TKLETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKEEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPN--QELSKXXXXXXXXXXXXXXLAFGWSWGPLGWTVPSEIFPLETRSAGQA 693
            +K+   GWR+SLGLAA PA++M +G  +LP+TPNS++ERGK EE +++L+KIRG   V+ E+QD++DA E A  +++P++NI+E + RP L+    +P FQ +TGIN I+FYAPVLF+++GF  DA+L S+ +TG V   ST +SI  VD+ GRR L + GGIQM  CQ++V   +G +FG +    L+                 F WSWGPLGW VPSEI PLE R AGQA
Sbjct:  195 SKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQA 427          
The following BLAST results are available for this feature:
BLAST of FC921530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
STA_RICCO6.218e-10280.87Sugar carrier protein A OS=Ricinus communis GN=STA... [more]
STP7_ARATH1.027e-9676.52Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]
STP13_ARATH6.065e-7358.15Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
STP14_ARATH2.157e-7055.41Sugar transport protein 14 OS=Arabidopsis thaliana... [more]
STP1_ARATH4.654e-6552.84Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STP11_ARATH1.037e-6454.63Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STP4_ARATH3.940e-6451.98Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]
STC_RICCO3.940e-6452.40Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
HEX6_RICCO2.554e-6351.54Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
STP10_ARATH6.291e-6248.93Sugar transport protein 10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC32106B02EF RVDevelopN Citrus clementina cDNA clone C32106B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921530 ID=FC921530; Name=FC921530; organism=Citrus clementina; type=EST; length=713bp
ACAAAGCTCGAGACGTGGGGATGGAGGCTCTCACTTGGTCTAGCAGCGGC
ACCGGCTTTAATGATGACAGTGGGAGGAATACTTCTCCCTGAAACACCTA
ACAGCTTAATCGAAAGAGGGAAAAAGGAGGAAGGGAGAAGAGTCCTAGAG
AAAATCAGAGGAACCAAAGAGGTCAATGCGGAGTATCAAGACATGGTAGA
TGCAAGTGAATTGGCTAACTCCATAAAGCACCCGTTTAGAAACATTCTTG
AGAGAAGGAACAGGCCGCAATTGGTTATGGCAATATTCATGCCGATGTTT
CAGATCCTCACAGGCATCAATTCCATTCTCTTCTATGCTCCAGTTTTGTT
CCAGTCTATGGGATTTAAGGGAGATGCTTCACTCTATTCCTCTGCTATGA
CTGGAGCAGTTCTTGCATCTTCTACACTCATTTCTATTGCGACTGTTGAT
AAACTTGGTCGAAGAGCTTTACTCATAAGTGGGGGAATACAAATGATCAC
ATGCCAGGTCATAGTGTCCATAATCCTGGGGCTCAAGTTTGGACCCAACC
AAGAACTATCAAAATCCTTCTCAATACTGGTGGTGGTGGTGATTTGCCTA
TTTGTTTTAGCTTTTGGATGGTCGTGGGGACCTCTTGGCTGGACAGTGCC
AAGTGAGATATTCCCATTAGAAACGCGATCAGCAGGACAAGCATACAGTG
GCCGTAAACCTTT
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